Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10012F06.5 |
| Conread position: | 91-301 |
| Cow position: | chr24:37217149-37217356 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 92-371 |
| Cow position: | chr24:7091448-7091172 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 9, 26 |
| Conread position: | 92-717 |
| Cow position: | chr24:16649168-16648547 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 25 |
| Conread position: | 92-727 |
| Cow position: | chr24:36559937-36559314 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 25 |
| Conread position: | 94-293 |
| Cow position: | chr24:6660457-6660249 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 47, 11 |
| Conread position: | 95-234 |
| Cow position: | chr24:22952289-22952427 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 121, 21 |
| Conread position: | 95-270 |
| Cow position: | chr24:4415376-4415202 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 46, 22 |
| Conread position: | 95-288 |
| Cow position: | chr24:6084170-6084362 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 153 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-290 |
| Cow position: | chr24:16084507-16084312 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 95, 22 |
| Conread position: | 95-293 |
| Cow position: | chr24:148466-148269 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 119, 10 |
| Conread position: | 95-293 |
| Cow position: | chr24:14585229-14585426 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 21 |
| Conread position: | 95-293 |
| Cow position: | chr24:17696820-17696628 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-294 |
| Cow position: | chr24:6145522-6145719 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 160 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 121, 10 |
| Conread position: | 95-294 |
| Cow position: | chr24:12086351-12086549 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 157 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-294 |
| Cow position: | chr24:12335621-12335424 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-294 |
| Cow position: | chr24:29187436-29187634 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 157 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-311 |
| Cow position: | chr24:6335843-6336048 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 95-311 |
| Cow position: | chr24:12237207-12237419 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 73, 22 |
| Conread position: | 95-315 |
| Cow position: | chr24:33739184-33738969 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 171 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 121, 22 |
| Conread position: | 95-350 |
| Cow position: | chr24:17303460-17303211 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 43, 19 |
| Conread position: | 95-364 |
| Cow position: | chr24:14384460-14384193 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 196 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 121, 14 |
| Conread position: | 95-366 |
| Cow position: | chr24:8152852-8152583 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 41, 15 |
| Conread position: | 95-384 |
| Cow position: | chr24:1447709-1447996 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 21 |
| Conread position: | 95-398 |
| Cow position: | chr24:35841470-35841165 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 28 |
| Conread position: | 97-251 |
| Cow position: | chr24:44017701-44017854 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 119, 12 |
| Conread position: | 97-280 |
| Cow position: | chr24:12485162-12484980 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 119, 12 |
| Conread position: | 97-293 |
| Cow position: | chr24:9188576-9188380 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 44, 12 |
| Conread position: | 97-293 |
| Cow position: | chr24:40549029-40549224 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 154 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 119, 12 |
| Conread position: | 98-234 |
| Cow position: | chr24:13524260-13524395 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 116, 19 |
| Conread position: | 98-680 |
| Cow position: | chr24:12797612-12797039 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 19 |
| Conread position: | 112-293 |
| Cow position: | chr24:22793340-22793524 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 112-294 |
| Cow position: | chr24:19833553-19833736 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 146 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 112-294 |
| Cow position: | chr24:33933534-33933717 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 112-319 |
| Cow position: | chr24:12113878-12113665 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 54, 66 |
| Conread position: | 112-333 |
| Cow position: | chr24:35838448-35838224 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 75 |
| Conread position: | 112-351 |
| Cow position: | chr24:12288221-12287988 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 104, 45 |
| Conread position: | 114-274 |
| Cow position: | chr24:6645873-6646034 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 114-290 |
| Cow position: | chr24:7061559-7061736 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 144 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 114-293 |
| Cow position: | chr24:5993059-5992877 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 144 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 114-293 |
| Cow position: | chr24:6434410-6434590 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 146 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 114-293 |
| Cow position: | chr24:8030321-8030501 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 115-324 |
| Cow position: | chr24:6024924-6024718 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 118-324 |
| Cow position: | chr24:9092108-9091902 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 98, 70 |
| Conread position: | 126-361 |
| Cow position: | chr24:16376707-16376934 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 40 |
| Conread position: | 127-263 |
| Cow position: | chr24:15392155-15392020 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 89, 50 |
| Conread position: | 147-385 |
| Cow position: | chr24:14333246-14333484 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 66, 108 |
| Conread position: | 163-293 |
| Cow position: | chr24:43813983-43814116 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 184-294 |
| Cow position: | chr24:12130733-12130623 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 90 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 32, 95 |
| Conread position: | 307-727 |
| Cow position: | chr24:12206273-12205860 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 18 |
| Conread position: | 347-727 |
| Cow position: | chr24:6335918-6336297 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 21 |
| Conread position: | 368-727 |
| Cow position: | chr24:14333558-14333913 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 249 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 17, 8 |
| Conread position: | 374-724 |
| Cow position: | chr24:17313439-17313098 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 33 |
| Conread position: | 383-726 |
| Cow position: | chr24:13302457-13302095 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 254 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 100, 17 |
| Conread position: | 383-732 |
| Cow position: | chr24:36708363-36708717 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 36 |
| Conread position: | 417-722 |
| Cow position: | chr24:38637689-38637976 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 143, 61 |
| Conread position: | 434-732 |
| Cow position: | chr24:7091014-7090719 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 224 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 11, 15 |
| Conread position: | 458-727 |
| Cow position: | chr24:12237397-12237680 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 53, 32 |
| Conread position: | 463-732 |
| Cow position: | chr24:6669964-6669696 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 176, 46 |
| Conread position: | 491-726 |
| Cow position: | chr24:16472102-16472342 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 14, 64 |
| Conread position: | 516-732 |
| Cow position: | chr24:32332258-32332473 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 123, 27 |
| Conread position: | 528-732 |
| Cow position: | chr24:148370-148166 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 40, 11 |
| Conread position: | 610-727 |
| Cow position: | chr24:12232644-12232527 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 101 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 610-732 |
| Cow position: | chr24:37217347-37217465 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 100 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 626-727 |
| Cow position: | chr24:12335426-12335328 (view UCSC Genome Browser custom track) |
| Alignm length: | 102 |
| Alignm identity: | 85 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 626-732 |
| Cow position: | chr24:12086547-12086652 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 626-732 |
| Cow position: | chr24:19833734-19833838 (view UCSC Genome Browser custom track) |
| Alignm length: | 107 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 630-732 |
| Cow position: | chr24:17696625-17696525 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 85 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 11, 0 |
Show alignments to all cow chromosomes.