Cow genome map

Conread name: Ss1.1-Ova1-OVRM10012F06.5

Conread position: 93-295
Cow position: chr4:12241420-12241219 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 159
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 123, 24

Conread position: 95-213
Cow position: chr4:528793-528909 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 96
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 22, 0

Conread position: 95-241
Cow position: chr4:4905946-4906091 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 121
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 121, 22

Conread position: 95-274
Cow position: chr4:3961391-3961569 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 146
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 121, 22

Conread position: 95-280
Cow position: chr4:24445401-24445223 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 148
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 22, 0

Conread position: 95-280
Cow position: chr4:32211967-32212151 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 151
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 121, 22

Conread position: 95-280
Cow position: chr4:44724883-44725067 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 146
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 121, 14

Conread position: 95-280
Cow position: chr4:47717806-47717623 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 151
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 121, 22

Conread position: 95-280
Cow position: chr4:47764370-47764187 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 146
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 121, 22

Conread position: 95-287
Cow position: chr4:16056402-16056593 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 152
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 121, 10

Conread position: 95-292
Cow position: chr4:66925799-66925994 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 162
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 121, 22

Conread position: 95-293
Cow position: chr4:158315-158514 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 161
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 121, 22

Conread position: 95-293
Cow position: chr4:355710-355906 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 155
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 121, 22

Conread position: 95-293
Cow position: chr4:602793-602990 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 156
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 121, 12

Conread position: 95-293
Cow position: chr4:6268828-6268633 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 153
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 121, 22

Conread position: 95-293
Cow position: chr4:12587098-12587295 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 156
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 121, 22

Conread position: 95-293
Cow position: chr4:30307659-30307460 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 159
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 121, 17

Conread position: 95-294
Cow position: chr4:6490565-6490367 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 156
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 121, 22

Conread position: 95-294
Cow position: chr4:17926455-17926257 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 152
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 121, 22

Conread position: 95-294
Cow position: chr4:18516696-18516894 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 157
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 121, 17

Conread position: 95-294
Cow position: chr4:41331237-41331436 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 151
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 121, 22

Conread position: 95-294
Cow position: chr4:48026197-48026394 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 155
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 121, 22

Conread position: 95-294
Cow position: chr4:57979428-57979625 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 151
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 22, 0

Conread position: 95-294
Cow position: chr4:61256696-61256889 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 166
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 22

Conread position: 95-332
Cow position: chr4:66179188-66178947 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 22

Conread position: 95-364
Cow position: chr4:11384759-11385022 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 22

Conread position: 95-371
Cow position: chr4:11393541-11393271 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 203
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 121, 22

Conread position: 95-477
Cow position: chr4:34185071-34184728 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 95-497
Cow position: chr4:60264768-60264368 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 22

Conread position: 95-528
Cow position: chr4:21338204-21337778 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 22

Conread position: 95-663
Cow position: chr4:1464125-1463573 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 22

Conread position: 95-732
Cow position: chr4:28830828-28831439 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 14

Conread position: 95-732
Cow position: chr4:46663992-46664615 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 34

Conread position: 96-294
Cow position: chr4:11618654-11618848 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 167
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 20

Conread position: 97-293
Cow position: chr4:9587065-9587260 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 150
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 119, 12

Conread position: 97-293
Cow position: chr4:13547831-13548026 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 156
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 119, 12

Conread position: 97-293
Cow position: chr4:65223732-65223537 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 149
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 119, 12

Conread position: 112-274
Cow position: chr4:33073295-33073132 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 130
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 30, 41

Conread position: 112-274
Cow position: chr4:41119828-41119991 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 131
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 104, 0

Conread position: 112-280
Cow position: chr4:25599804-25599635 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 136
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 101, 0

Conread position: 112-280
Cow position: chr4:26887048-26886881 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 137
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 119, 0

Conread position: 112-280
Cow position: chr4:43880924-43881092 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 137
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 104, 27

Conread position: 112-294
Cow position: chr4:10408492-10408671 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 151
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 88, 40

Conread position: 112-294
Cow position: chr4:16359698-16359881 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 142
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 104, 0

Conread position: 112-294
Cow position: chr4:45049483-45049301 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 140
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 112-325
Cow position: chr4:13492391-13492599 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 171
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 104, 51

Conread position: 112-331
Cow position: chr4:51044114-51043898 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 163
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 104, 46

Conread position: 112-371
Cow position: chr4:8598342-8598084 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 118

Conread position: 113-294
Cow position: chr4:43319830-43319649 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 144
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 103, 85

Conread position: 114-280
Cow position: chr4:4415899-4416066 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 137
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 102, 0

Conread position: 114-293
Cow position: chr4:1930807-1930625 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 150
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 102, 0

Conread position: 114-293
Cow position: chr4:5879982-5880164 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 153
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 0

Conread position: 114-293
Cow position: chr4:9354954-9354774 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 142
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 102, 0

Conread position: 114-293
Cow position: chr4:18424708-18424526 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 145
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 100, 0

Conread position: 115-293
Cow position: chr4:101115-100934 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 148
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 101, 0

Conread position: 116-294
Cow position: chr4:36896188-36896365 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 129
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 100, 82

Conread position: 120-293
Cow position: chr4:3125618-3125794 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 144
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 96, 0

Conread position: 121-294
Cow position: chr4:31565481-31565306 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 136
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 64, 0

Conread position: 129-280
Cow position: chr4:27333267-27333419 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 125
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 87, 0

Conread position: 136-293
Cow position: chr4:41954312-41954473 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 127
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 15, 0

Conread position: 142-293
Cow position: chr4:41957973-41958128 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 124
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 9, 0

Conread position: 146-293
Cow position: chr4:18190255-18190404 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 121
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 70, 50

Conread position: 149-319
Cow position: chr4:33493677-33493847 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 124
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 150-293
Cow position: chr4:31669122-31669268 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 65, 0

Conread position: 204-359
Cow position: chr4:27443479-27443635 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 12, 141

Conread position: 268-500
Cow position: chr4:54955720-54955950 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 176
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 97, 129

Conread position: 390-592
Cow position: chr4:14822022-14821825 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 146
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 122, 10

Conread position: 442-621
Cow position: chr4:21565311-21565492 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 133
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 69, 43

Conread position: 443-718
Cow position: chr4:14549809-14550073 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 188
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 172, 39

Conread position: 477-732
Cow position: chr4:34184665-34184421 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 188
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 32, 69

Conread position: 497-723
Cow position: chr4:60264295-60264074 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 177
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 11, 70

Conread position: 584-722
Cow position: chr4:14821600-14821459 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 112
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 34, 88

Conread position: 619-732
Cow position: chr4:26886871-26886762 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 94
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 7, 0

Conread position: 626-727
Cow position: chr4:12241222-12241123 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 85
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 626-727
Cow position: chr4:36896363-36896462 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 86
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 8, 0

Conread position: 626-732
Cow position: chr4:6490369-6490265 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 90
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 15, 0

Conread position: 626-732
Cow position: chr4:43319651-43319547 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 89
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 626-732
Cow position: chr4:45049303-45049199 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 89
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 15, 0

Conread position: 627-732
Cow position: chr4:43881105-43881208 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 87
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 632-732
Cow position: chr4:355908-356008 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 85
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 13, 33

Show alignments to all cow chromosomes.