Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10064H02.5 |
| Conread position: | 16-230 |
| Cow position: | chrX:6041229-6041005 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 50, 13 |
| Conread position: | 29-202 |
| Cow position: | chrX:29761692-29761507 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 41-251 |
| Cow position: | chrX:630305-630086 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 29, 168 |
| Conread position: | 43-197 |
| Cow position: | chrX:16419157-16419318 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 27, 38 |
| Conread position: | 43-199 |
| Cow position: | chrX:31340717-31340884 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 43-202 |
| Cow position: | chrX:2300932-2301101 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 43-203 |
| Cow position: | chrX:31602664-31602835 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 43-214 |
| Cow position: | chrX:28787360-28787534 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 27, 12 |
| Conread position: | 43-216 |
| Cow position: | chrX:17042695-17042871 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 94, 160 |
| Conread position: | 43-223 |
| Cow position: | chrX:39545969-39545788 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 27, 115 |
| Conread position: | 43-224 |
| Cow position: | chrX:6563530-6563721 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 42, 27 |
| Conread position: | 43-224 |
| Cow position: | chrX:25388231-25388048 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 26, 124 |
| Conread position: | 43-226 |
| Cow position: | chrX:39415364-39415164 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 43-230 |
| Cow position: | chrX:29874364-29874163 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 25, 197 |
| Conread position: | 43-231 |
| Cow position: | chrX:27287726-27287528 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 42, 28 |
| Conread position: | 43-231 |
| Cow position: | chrX:38999862-39000059 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 143 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 96, 28 |
| Conread position: | 43-235 |
| Cow position: | chrX:20376977-20377179 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 26, 109 |
| Conread position: | 43-235 |
| Cow position: | chrX:21664713-21664510 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 26, 42 |
| Conread position: | 44-200 |
| Cow position: | chrX:37760894-37761045 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 93, 20 |
| Conread position: | 44-229 |
| Cow position: | chrX:36009905-36009707 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 45-206 |
| Cow position: | chrX:41083923-41084097 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 45-230 |
| Cow position: | chrX:24132142-24131949 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 24, 187 |
| Conread position: | 46-214 |
| Cow position: | chrX:17964513-17964332 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 46-237 |
| Cow position: | chrX:18142437-18142245 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 101, 24 |
| Conread position: | 48-234 |
| Cow position: | chrX:40789223-40789416 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 37, 21 |
| Conread position: | 48-237 |
| Cow position: | chrX:15049506-15049699 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 49-233 |
| Cow position: | chrX:12304573-12304773 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 21, 189 |
| Conread position: | 69-201 |
| Cow position: | chrX:10289588-10289452 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 69-207 |
| Cow position: | chrX:16291981-16291839 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 69-225 |
| Cow position: | chrX:7497281-7497438 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 113, 94 |
| Conread position: | 69-231 |
| Cow position: | chrX:2786518-2786354 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 70, 126 |
| Conread position: | 69-236 |
| Cow position: | chrX:25338226-25338399 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 67, 163 |
| Conread position: | 69-253 |
| Cow position: | chrX:39339067-39338873 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 70-237 |
| Cow position: | chrX:43426334-43426507 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 75-232 |
| Cow position: | chrX:15305255-15305084 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 75-252 |
| Cow position: | chrX:22326164-22326346 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 64, 170 |
| Conread position: | 81-230 |
| Cow position: | chrX:488729-488885 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 82-214 |
| Cow position: | chrX:8103237-8103099 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 58, 16 |
| Conread position: | 84-231 |
| Cow position: | chrX:22284936-22285081 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 43, 61 |
| Conread position: | 86-230 |
| Cow position: | chrX:19678216-19678070 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 95, 0 |
Show alignments to all cow chromosomes.