Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10090H09.5 |
| Conread position: | 7-324 |
| Cow position: | chr13:56292108-56291790 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 121, 109 |
| Conread position: | 10-500 |
| Cow position: | chr13:39984413-39984903 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 302 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 382, 371 |
| Conread position: | 35-710 |
| Cow position: | chr13:39984186-39984861 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 10 |
| Conread position: | 62-709 |
| Cow position: | chr13:56333525-56334181 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 404 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 62, 71 |
| Conread position: | 65-422 |
| Cow position: | chr13:56292134-56291779 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 241 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 273, 318 |
| Conread position: | 65-679 |
| Cow position: | chr13:56333696-56334319 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 132 |
| Conread position: | 65-712 |
| Cow position: | chr13:56292548-56291907 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 28 |
| Conread position: | 66-541 |
| Cow position: | chr13:56317328-56317796 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 295 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 22, 34 |
| Conread position: | 67-712 |
| Cow position: | chr13:39984134-39984779 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 220 |
| Conread position: | 73-710 |
| Cow position: | chr13:39983888-39984525 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 307 |
| Conread position: | 73-712 |
| Cow position: | chr13:39984056-39984695 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 449, 456 |
| Conread position: | 76-710 |
| Cow position: | chr13:56333623-56334266 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 212 |
| Conread position: | 78-533 |
| Cow position: | chr13:22125174-22125629 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 272 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 299, 313 |
| Conread position: | 78-615 |
| Cow position: | chr13:39930641-39931176 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 311 |
| Conread position: | 78-703 |
| Cow position: | chr13:56292704-56292084 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 384 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 139, 191 |
| Conread position: | 79-533 |
| Cow position: | chr13:24162901-24163355 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 298, 312 |
| Conread position: | 82-547 |
| Cow position: | chr13:39984401-39984866 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 125 |
| Conread position: | 82-710 |
| Cow position: | chr13:39983813-39984441 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 440, 445 |
| Conread position: | 82-717 |
| Cow position: | chr13:39983981-39984615 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 440, 447 |
| Conread position: | 83-378 |
| Cow position: | chr13:56334059-56334352 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 42, 50 |
| Conread position: | 84-490 |
| Cow position: | chr13:22125516-22125922 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 308, 296 |
| Conread position: | 84-645 |
| Cow position: | chr13:22125096-22125657 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 325 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 84-668 |
| Cow position: | chr13:39984319-39984903 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 354, 358 |
| Conread position: | 84-679 |
| Cow position: | chr13:22124844-22125439 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 360 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 265, 247 |
| Conread position: | 84-679 |
| Cow position: | chr13:24162570-24163165 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 360 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 265, 247 |
| Conread position: | 84-682 |
| Cow position: | chr13:24162822-24163420 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 340 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 84-708 |
| Cow position: | chr13:22124928-22125553 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 368 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 155, 188 |
| Conread position: | 84-710 |
| Cow position: | chr13:22124760-22125386 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 298 |
| Conread position: | 84-710 |
| Cow position: | chr13:22125012-22125638 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 367 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 84, 79 |
| Conread position: | 84-710 |
| Cow position: | chr13:24162486-24163112 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 298 |
| Conread position: | 84-710 |
| Cow position: | chr13:24162738-24163364 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 365 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 84, 79 |
| Conread position: | 86-492 |
| Cow position: | chr13:56292194-56291790 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 299, 37 |
| Conread position: | 95-710 |
| Cow position: | chr13:56292850-56292234 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 364 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 297, 70 |
| Conread position: | 99-703 |
| Cow position: | chr13:56292431-56291831 (view UCSC Genome Browser custom track) |
| Alignm length: | 612 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 234 |
| Conread position: | 106-699 |
| Cow position: | chr13:39930585-39931176 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 556, 0 |
| Conread position: | 108-660 |
| Cow position: | chr13:56292332-56291790 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 113 |
| Conread position: | 142-669 |
| Cow position: | chr13:29183764-29183241 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 328 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 153, 69 |
| Conread position: | 146-447 |
| Cow position: | chr13:56317929-56318230 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 84, 67 |
| Conread position: | 146-677 |
| Cow position: | chr13:29183853-29183318 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 337 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 32, 128 |
| Conread position: | 148-661 |
| Cow position: | chr13:56292718-56292199 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 319 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 141, 192 |
| Conread position: | 180-701 |
| Cow position: | chr13:22124688-22125209 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 309 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 393, 416 |
| Conread position: | 180-701 |
| Cow position: | chr13:24162414-24162935 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 312 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 409, 402 |
| Conread position: | 180-701 |
| Cow position: | chr13:39930575-39931096 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 209 |
| Conread position: | 209-689 |
| Cow position: | chr13:56333504-56333984 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 294 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 92, 82 |
Show alignments to all cow chromosomes.