Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10090H09.5 |
| Conread position: | 1-361 |
| Cow position: | chr17:22551841-22551481 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-520 |
| Cow position: | chr17:22552009-22551490 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-591 |
| Cow position: | chr17:22589763-22589173 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-682 |
| Cow position: | chr17:22552177-22551496 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 470 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 465, 459 |
| Conread position: | 1-706 |
| Cow position: | chr17:22590099-22589394 (view UCSC Genome Browser custom track) |
| Alignm length: | 707 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 297, 290 |
| Conread position: | 2-683 |
| Cow position: | chr17:22552596-22551915 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 26 |
| Conread position: | 3-709 |
| Cow position: | chr17:22552763-22552057 (view UCSC Genome Browser custom track) |
| Alignm length: | 709 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 376, 397 |
| Conread position: | 3-709 |
| Cow position: | chr17:22553099-22552393 (view UCSC Genome Browser custom track) |
| Alignm length: | 708 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 312, 308 |
| Conread position: | 3-710 |
| Cow position: | chr17:22552427-22551720 (view UCSC Genome Browser custom track) |
| Alignm length: | 709 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 312, 308 |
| Conread position: | 7-521 |
| Cow position: | chr17:22452120-22451606 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 27 |
| Conread position: | 7-673 |
| Cow position: | chr17:22589841-22589175 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 291, 277 |
| Conread position: | 7-674 |
| Cow position: | chr17:22452372-22451705 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 22 |
| Conread position: | 7-699 |
| Cow position: | chr17:22499386-22498694 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 623, 631 |
| Conread position: | 7-710 |
| Cow position: | chr17:22552507-22551804 (view UCSC Genome Browser custom track) |
| Alignm length: | 704 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-609 |
| Cow position: | chr17:22499047-22498457 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 32 |
| Conread position: | 10-615 |
| Cow position: | chr17:22473346-22473952 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 33 |
| Conread position: | 10-689 |
| Cow position: | chr17:22499299-22498620 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 291, 274 |
| Conread position: | 10-709 |
| Cow position: | chr17:22552840-22552141 (view UCSC Genome Browser custom track) |
| Alignm length: | 700 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-709 |
| Cow position: | chr17:22590174-22589474 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 466 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 694, 0 |
| Conread position: | 10-710 |
| Cow position: | chr17:22589922-22589222 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 208 |
| Conread position: | 11-278 |
| Cow position: | chr17:22551747-22551480 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-710 |
| Cow position: | chr17:22552335-22551636 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 364, 374 |
| Conread position: | 11-710 |
| Cow position: | chr17:22552671-22551972 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 300 |
| Conread position: | 11-710 |
| Cow position: | chr17:22590257-22589558 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 22 |
| Conread position: | 15-709 |
| Cow position: | chr17:22590001-22589307 (view UCSC Genome Browser custom track) |
| Alignm length: | 698 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 362, 385 |
| Conread position: | 21-710 |
| Cow position: | chr17:22552997-22552308 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-716 |
| Cow position: | chr17:22552909-22552219 (view UCSC Genome Browser custom track) |
| Alignm length: | 694 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 32 |
| Conread position: | 43-710 |
| Cow position: | chr17:22553143-22552476 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 332, 342 |
| Conread position: | 65-446 |
| Cow position: | chr17:22551861-22551480 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 65-598 |
| Cow position: | chr17:22499076-22498543 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 65-700 |
| Cow position: | chr17:22452398-22451763 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 312, 320 |
| Conread position: | 66-709 |
| Cow position: | chr17:22590286-22589643 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 414 |
| Conread position: | 66-710 |
| Cow position: | chr17:22552196-22551552 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 76-683 |
| Cow position: | chr17:22499149-22498542 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 208 |
| Conread position: | 81-709 |
| Cow position: | chr17:22473333-22473963 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 210 |
| Conread position: | 82-683 |
| Cow position: | chr17:22452213-22451612 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 295, 303 |
| Conread position: | 84-710 |
| Cow position: | chr17:22499393-22498767 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 385, 379 |
| Conread position: | 98-710 |
| Cow position: | chr17:22473266-22473878 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 371, 363 |
| Conread position: | 106-710 |
| Cow position: | chr17:41440931-41440327 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 344 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 269, 279 |
| Conread position: | 106-710 |
| Cow position: | chr17:41441099-41440495 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 360 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 226, 233 |
| Conread position: | 132-712 |
| Cow position: | chr17:22590304-22589724 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 136-710 |
| Cow position: | chr17:22452411-22451837 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 148 |
| Conread position: | 146-715 |
| Cow position: | chr17:22473233-22473798 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 326, 30 |
| Conread position: | 163-710 |
| Cow position: | chr17:22499398-22498851 (view UCSC Genome Browser custom track) |
| Alignm length: | 548 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 171-710 |
| Cow position: | chr17:41441118-41440579 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 304 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 480, 474 |
| Conread position: | 215-709 |
| Cow position: | chr17:22590305-22589811 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 72 |
| Conread position: | 272-716 |
| Cow position: | chr17:22553166-22552723 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 296 |
Show alignments to all cow chromosomes.