Cow genome map

Conread name: Ss1.1-Ova1-OVRM10090H09.5

Conread position: 1-345
Cow position: chr19:23597369-23597713 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 229
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 279, 286

Conread position: 1-457
Cow position: chr19:20678291-20678744 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 286
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 59, 40

Conread position: 1-591
Cow position: chr19:23614528-23615118 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 221, 210

Conread position: 1-656
Cow position: chr19:23649810-23650465 (view UCSC Genome Browser custom track)
Alignm length: 658
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 378, 390

Conread position: 1-709
Cow position: chr19:14939992-14940700 (view UCSC Genome Browser custom track)
Alignm length: 710
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 615, 630

Conread position: 1-709
Cow position: chr19:23613436-23614144 (view UCSC Genome Browser custom track)
Alignm length: 710
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 557, 544

Conread position: 1-709
Cow position: chr19:23614024-23614732 (view UCSC Genome Browser custom track)
Alignm length: 710
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 51

Conread position: 1-712
Cow position: chr19:23613352-23614063 (view UCSC Genome Browser custom track)
Alignm length: 712
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-716
Cow position: chr19:23614108-23614823 (view UCSC Genome Browser custom track)
Alignm length: 717
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 303, 284

Conread position: 1-718
Cow position: chr19:23613520-23614237 (view UCSC Genome Browser custom track)
Alignm length: 720
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 390, 362

Conread position: 2-655
Cow position: chr19:14940412-14941066 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 645

Conread position: 3-509
Cow position: chr19:23649980-23650486 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 303, 281

Conread position: 3-697
Cow position: chr19:14940162-14940856 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 3-709
Cow position: chr19:20677789-20678495 (view UCSC Genome Browser custom track)
Alignm length: 709
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 157

Conread position: 3-709
Cow position: chr19:23613690-23614396 (view UCSC Genome Browser custom track)
Alignm length: 708
Alignm identity: 464
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 217

Conread position: 3-710
Cow position: chr19:14960051-14959360 (view UCSC Genome Browser custom track)
Alignm length: 711
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 42

Conread position: 7-436
Cow position: chr19:20635371-20634946 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 264
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 126, 119

Conread position: 7-436
Cow position: chr19:43570130-43569703 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 281
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 202, 210

Conread position: 7-678
Cow position: chr19:14960381-14959714 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 37

Conread position: 7-706
Cow position: chr19:23649480-23650179 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 280

Conread position: 7-710
Cow position: chr19:14959559-14958871 (view UCSC Genome Browser custom track)
Alignm length: 705
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 291, 253

Conread position: 8-465
Cow position: chr19:14948455-14947999 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 286
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 50, 0

Conread position: 9-710
Cow position: chr19:23596876-23597574 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 26

Conread position: 10-490
Cow position: chr19:14940589-14941069 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 367, 372

Conread position: 10-528
Cow position: chr19:20635536-20635018 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 19

Conread position: 10-540
Cow position: chr19:43570211-43569685 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 385, 391

Conread position: 10-709
Cow position: chr19:23614369-23615068 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 288, 274

Conread position: 10-710
Cow position: chr19:14940253-14940953 (view UCSC Genome Browser custom track)
Alignm length: 702
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 366, 372

Conread position: 10-710
Cow position: chr19:14940337-14941037 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 88

Conread position: 10-710
Cow position: chr19:23613613-23614313 (view UCSC Genome Browser custom track)
Alignm length: 702
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 19

Conread position: 10-710
Cow position: chr19:23613865-23614565 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 19

Conread position: 13-586
Cow position: chr19:23649906-23650479 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 43

Conread position: 13-710
Cow position: chr19:23613784-23614481 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 271

Conread position: 14-677
Cow position: chr19:23614457-23615118 (view UCSC Genome Browser custom track)
Alignm length: 666
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 15

Conread position: 14-703
Cow position: chr19:23649739-23650428 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 363, 377

Conread position: 35-679
Cow position: chr19:23597067-23597711 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 342, 351

Conread position: 35-715
Cow position: chr19:14960437-14959762 (view UCSC Genome Browser custom track)
Alignm length: 682
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 556, 290

Conread position: 39-338
Cow position: chr19:14959122-14958823 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 194
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 60-710
Cow position: chr19:23614335-23614985 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 578, 563

Conread position: 62-574
Cow position: chr19:14940557-14941069 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 222

Conread position: 62-667
Cow position: chr19:43570243-43569642 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 222

Conread position: 65-429
Cow position: chr19:23597349-23597713 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 234
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 65-710
Cow position: chr19:23649454-23650099 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 312, 321

Conread position: 66-697
Cow position: chr19:23649707-23650338 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 311, 316

Conread position: 67-710
Cow position: chr19:20677685-20678328 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 63

Conread position: 67-710
Cow position: chr19:20677769-20678412 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 319

Conread position: 68-709
Cow position: chr19:43570395-43569764 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 404, 117

Conread position: 73-708
Cow position: chr19:23614264-23614899 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 123

Conread position: 73-709
Cow position: chr19:14940148-14940784 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 214

Conread position: 73-710
Cow position: chr19:14960483-14959848 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 302, 0

Conread position: 76-676
Cow position: chr19:20635638-20635038 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 74

Conread position: 76-706
Cow position: chr19:23613343-23613973 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 230, 208

Conread position: 76-710
Cow position: chr19:20677946-20678580 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 55

Conread position: 76-710
Cow position: chr19:23649381-23650015 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 408, 402

Conread position: 78-536
Cow position: chr19:14948469-14948012 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 391, 66

Conread position: 78-709
Cow position: chr19:20678032-20678663 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 143

Conread position: 82-508
Cow position: chr19:20678288-20678714 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 43

Conread position: 82-710
Cow position: chr19:14959568-14958955 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 262

Conread position: 82-710
Cow position: chr19:23649303-23649931 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 308

Conread position: 82-710
Cow position: chr19:23649639-23650267 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 203

Conread position: 83-710
Cow position: chr19:20677533-20678160 (view UCSC Genome Browser custom track)
Alignm length: 632
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 491, 472

Conread position: 84-709
Cow position: chr19:14939989-14940616 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 0

Conread position: 84-710
Cow position: chr19:23614023-23614649 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 304

Conread position: 85-709
Cow position: chr19:14959650-14959040 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 343

Conread position: 104-716
Cow position: chr19:20677305-20677913 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 54

Conread position: 108-703
Cow position: chr19:14959708-14959124 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 19

Conread position: 108-710
Cow position: chr19:20677642-20678244 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 25

Conread position: 114-715
Cow position: chr19:23597062-23597663 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 370, 363

Conread position: 132-710
Cow position: chr19:23596831-23597406 (view UCSC Genome Browser custom track)
Alignm length: 582
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 201

Conread position: 144-634
Cow position: chr19:14948487-14947998 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 424, 78

Conread position: 146-678
Cow position: chr19:14916028-14916543 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 340
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 269, 107

Conread position: 146-710
Cow position: chr19:20635808-20635256 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 350
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 105, 70

Conread position: 147-674
Cow position: chr19:14959335-14958823 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 29

Conread position: 148-710
Cow position: chr19:43570398-43569847 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 331, 5

Conread position: 150-594
Cow position: chr19:14959257-14958819 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 0

Conread position: 153-709
Cow position: chr19:20635729-20635173 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 50

Conread position: 158-619
Cow position: chr19:14915955-14916413 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 292
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 58, 13

Conread position: 158-710
Cow position: chr19:20635640-20635088 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 58

Conread position: 158-715
Cow position: chr19:20677440-20677997 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 46

Conread position: 171-713
Cow position: chr19:23613354-23613896 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 389, 396

Conread position: 230-710
Cow position: chr19:23649283-23649763 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 59

Conread position: 231-673
Cow position: chr19:14948484-14948043 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 80

Conread position: 249-713
Cow position: chr19:14939988-14940452 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 229

Conread position: 276-712
Cow position: chr19:14960448-14960014 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 12

Conread position: 294-710
Cow position: chr19:23596825-23597238 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 258
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 19, 10

Conread position: 300-720
Cow position: chr19:23613315-23613734 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 411, 0

Conread position: 313-710
Cow position: chr19:23649282-23649679 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 242
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 315-716
Cow position: chr19:14948484-14948084 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 0

Conread position: 316-716
Cow position: chr19:43570398-43570009 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 258
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 61, 5

Conread position: 476-710
Cow position: chr19:14939966-14940197 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 156
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 10, 0

Show alignments to all cow chromosomes.