Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10090H09.5 |
| Conread position: | 1-337 |
| Cow position: | chr23:24654119-24654455 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 38, 28 |
| Conread position: | 1-342 |
| Cow position: | chr23:25660405-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 147, 141 |
| Conread position: | 1-512 |
| Cow position: | chr23:25626536-25627044 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 46 |
| Conread position: | 1-543 |
| Cow position: | chr23:24522731-24522192 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 28 |
| Conread position: | 2-464 |
| Cow position: | chr23:24535874-24535411 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 279 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 398, 386 |
| Conread position: | 2-679 |
| Cow position: | chr23:24639387-24640064 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 375, 380 |
| Conread position: | 3-443 |
| Cow position: | chr23:24626312-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 26 |
| Conread position: | 3-491 |
| Cow position: | chr23:25698568-25698080 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 308 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 229, 210 |
| Conread position: | 3-509 |
| Cow position: | chr23:25723955-25723453 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 301 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 303, 243 |
| Conread position: | 3-510 |
| Cow position: | chr23:25660239-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 147 |
| Conread position: | 3-512 |
| Cow position: | chr23:24560634-24560125 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-710 |
| Cow position: | chr23:24639307-24640011 (view UCSC Genome Browser custom track) |
| Alignm length: | 709 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 94 |
| Conread position: | 7-520 |
| Cow position: | chr23:24547154-24546641 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-709 |
| Cow position: | chr23:24560880-24560180 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 62 |
| Conread position: | 10-706 |
| Cow position: | chr23:24522473-24521775 (view UCSC Genome Browser custom track) |
| Alignm length: | 714 |
| Alignm identity: | 431 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 308, 391 |
| Conread position: | 14-677 |
| Cow position: | chr23:24547315-24546653 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 660, 0 |
| Conread position: | 15-429 |
| Cow position: | chr23:24639652-24640066 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 266 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 133, 127 |
| Conread position: | 15-583 |
| Cow position: | chr23:25660167-25660735 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 201 |
| Conread position: | 21-709 |
| Cow position: | chr23:25625969-25626653 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 356, 15 |
| Conread position: | 22-710 |
| Cow position: | chr23:24639239-24639927 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 30 |
| Conread position: | 60-593 |
| Cow position: | chr23:24547185-24546652 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 315, 325 |
| Conread position: | 61-592 |
| Cow position: | chr23:24560660-24560129 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 65-690 |
| Cow position: | chr23:25626432-25627055 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 107 |
| Conread position: | 65-710 |
| Cow position: | chr23:25626264-25626906 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 150 |
| Conread position: | 72-508 |
| Cow position: | chr23:24626297-24626733 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 28 |
| Conread position: | 73-631 |
| Cow position: | chr23:24535971-24535412 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 525, 0 |
| Conread position: | 78-592 |
| Cow position: | chr23:25626530-25627040 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 5 |
| Conread position: | 78-610 |
| Cow position: | chr23:24639547-24640079 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 78-709 |
| Cow position: | chr23:25626361-25626989 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 164 |
| Conread position: | 78-712 |
| Cow position: | chr23:24536050-24535415 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 484, 466 |
| Conread position: | 82-509 |
| Cow position: | chr23:24654116-24654535 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 388, 288 |
| Conread position: | 83-710 |
| Cow position: | chr23:24547330-24546703 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 132 |
| Conread position: | 83-712 |
| Cow position: | chr23:24560890-24560261 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 84-413 |
| Cow position: | chr23:25724042-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 86-708 |
| Cow position: | chr23:24522814-24522194 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 616, 201 |
| Conread position: | 92-430 |
| Cow position: | chr23:24654042-24654380 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 289, 275 |
| Conread position: | 98-536 |
| Cow position: | chr23:24522118-24521693 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 275 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 360, 111 |
| Conread position: | 99-631 |
| Cow position: | chr23:24522717-24522188 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 108 |
| Conread position: | 99-657 |
| Cow position: | chr23:25698640-25698082 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 292 |
| Conread position: | 99-717 |
| Cow position: | chr23:24639232-24639849 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 245 |
| Conread position: | 106-677 |
| Cow position: | chr23:24560699-24560128 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 106-678 |
| Cow position: | chr23:25660174-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 198 |
| Conread position: | 108-519 |
| Cow position: | chr23:25724102-25723692 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 269, 292 |
| Conread position: | 133-611 |
| Cow position: | chr23:24626274-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 30 |
| Conread position: | 146-708 |
| Cow position: | chr23:25698677-25698114 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 354, 369 |
| Conread position: | 146-710 |
| Cow position: | chr23:25626009-25626573 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 71 |
| Conread position: | 162-719 |
| Cow position: | chr23:25660146-25660702 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 229 |
| Conread position: | 173-456 |
| Cow position: | chr23:24521972-24521689 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 182 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 201, 236 |
| Conread position: | 176-519 |
| Cow position: | chr23:24654042-24654385 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 228 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 216-710 |
| Cow position: | chr23:24626201-24626683 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 50 |
| Conread position: | 217-683 |
| Cow position: | chr23:24626274-24626738 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 448, 0 |
| Conread position: | 221-710 |
| Cow position: | chr23:25698686-25698197 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 307 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 79, 70 |
| Conread position: | 238-710 |
| Cow position: | chr23:24560903-24560431 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 50 |
| Conread position: | 247-716 |
| Cow position: | chr23:24547334-24546864 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 46 |
| Conread position: | 252-709 |
| Cow position: | chr23:24522814-24522362 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 289 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 100, 24 |
| Conread position: | 261-599 |
| Cow position: | chr23:24654043-24654381 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 219 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 265-710 |
| Cow position: | chr23:24639230-24639675 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 286 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 151, 159 |
| Conread position: | 267-657 |
| Cow position: | chr23:25724111-25723721 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 17 |
| Conread position: | 344-678 |
| Cow position: | chr23:24654042-24654376 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 351-709 |
| Cow position: | chr23:25724111-25723753 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 118, 113 |
| Conread position: | 406-709 |
| Cow position: | chr23:24626141-24626431 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 296, 12 |
| Conread position: | 428-710 |
| Cow position: | chr23:24654042-24654324 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 188 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 435-703 |
| Cow position: | chr23:25724111-25723843 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.