Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10090H09.5 |
| Conread position: | 1-436 |
| Cow position: | chr24:17035369-17034935 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 270 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 28, 19 |
| Conread position: | 1-710 |
| Cow position: | chr24:17078260-17077551 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 567, 561 |
| Conread position: | 2-368 |
| Cow position: | chr24:17077840-17077474 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 9, 28 |
| Conread position: | 3-588 |
| Cow position: | chr24:17070462-17071047 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 44 |
| Conread position: | 7-444 |
| Cow position: | chr24:17077918-17077482 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 38 |
| Conread position: | 7-697 |
| Cow position: | chr24:17035699-17035009 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 38 |
| Conread position: | 7-710 |
| Cow position: | chr24:17035951-17035248 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 611, 618 |
| Conread position: | 10-710 |
| Cow position: | chr24:17036116-17035416 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 285 |
| Conread position: | 13-548 |
| Cow position: | chr24:17077996-17077462 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 492, 0 |
| Conread position: | 13-703 |
| Cow position: | chr24:17036365-17035675 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 184 |
| Conread position: | 14-683 |
| Cow position: | chr24:17036028-17035359 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 203 |
| Conread position: | 25-520 |
| Cow position: | chr24:17035429-17034935 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 306 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 490, 0 |
| Conread position: | 61-710 |
| Cow position: | chr24:17036485-17035836 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 62-432 |
| Cow position: | chr24:17070689-17071059 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 157 |
| Conread position: | 65-674 |
| Cow position: | chr24:17078112-17077503 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 65-682 |
| Cow position: | chr24:17036397-17035780 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 210 |
| Conread position: | 65-683 |
| Cow position: | chr24:17036229-17035611 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 408, 398 |
| Conread position: | 65-688 |
| Cow position: | chr24:17035557-17034933 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 550, 560 |
| Conread position: | 65-689 |
| Cow position: | chr24:17036145-17035521 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 404, 399 |
| Conread position: | 65-709 |
| Cow position: | chr24:17035809-17035164 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 637, 0 |
| Conread position: | 66-284 |
| Cow position: | chr24:17013314-17013531 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 41, 37 |
| Conread position: | 73-710 |
| Cow position: | chr24:17035717-17035080 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 76-712 |
| Cow position: | chr24:17078269-17077633 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 82-426 |
| Cow position: | chr24:17013162-17013506 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 231 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 150, 137 |
| Conread position: | 84-709 |
| Cow position: | chr24:17036546-17035921 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 301 |
| Conread position: | 92-678 |
| Cow position: | chr24:17070465-17071053 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 371 |
| Conread position: | 99-683 |
| Cow position: | chr24:17036612-17036031 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 437, 53 |
| Conread position: | 106-709 |
| Cow position: | chr24:17070399-17071000 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 169-560 |
| Cow position: | chr24:17013165-17013556 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 208, 213 |
| Conread position: | 188-710 |
| Cow position: | chr24:17036607-17036088 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 194-614 |
| Cow position: | chr24:17013109-17013525 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 277 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 21, 30 |
| Conread position: | 236-712 |
| Cow position: | chr24:17070443-17070919 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 355, 362 |
| Conread position: | 250-465 |
| Cow position: | chr24:16986428-16986643 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 142 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 126, 113 |
| Conread position: | 264-710 |
| Cow position: | chr24:17070387-17070833 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 43 |
| Conread position: | 319-678 |
| Cow position: | chr24:17013147-17013506 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 238 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 165, 142 |
| Conread position: | 403-703 |
| Cow position: | chr24:17013147-17013447 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 163, 152 |
Show alignments to all cow chromosomes.