Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10090H09.5 |
| Conread position: | 1-361 |
| Cow position: | chr28:7758493-7758853 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 236 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 304, 287 |
| Conread position: | 1-428 |
| Cow position: | chr28:33210229-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 271 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 333, 382 |
| Conread position: | 1-463 |
| Cow position: | chr28:9253188-9253651 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 439, 426 |
| Conread position: | 1-595 |
| Cow position: | chr28:9290088-9290677 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 120 |
| Conread position: | 2-580 |
| Cow position: | chr28:7757754-7758332 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 31 |
| Conread position: | 3-488 |
| Cow position: | chr28:34696083-34696568 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 44 |
| Conread position: | 3-492 |
| Cow position: | chr28:9299224-9299710 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 303 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 277, 284 |
| Conread position: | 3-571 |
| Cow position: | chr28:34695999-34696567 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 39 |
| Conread position: | 3-587 |
| Cow position: | chr28:7758327-7758911 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 468, 450 |
| Conread position: | 3-606 |
| Cow position: | chr28:7810351-7810945 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 183 |
| Conread position: | 3-619 |
| Cow position: | chr28:9298570-9299182 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 97 |
| Conread position: | 7-512 |
| Cow position: | chr28:9253110-9253615 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 368, 375 |
| Conread position: | 7-576 |
| Cow position: | chr28:34673362-34673931 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 345 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 189, 208 |
| Conread position: | 7-664 |
| Cow position: | chr28:7757675-7758332 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 464, 480 |
| Conread position: | 7-703 |
| Cow position: | chr28:7757927-7758607 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 227, 231 |
| Conread position: | 7-712 |
| Cow position: | chr28:9298741-9299429 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 10-677 |
| Cow position: | chr28:9252945-9253612 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 365, 371 |
| Conread position: | 10-679 |
| Cow position: | chr28:9299077-9299727 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 365, 107 |
| Conread position: | 10-699 |
| Cow position: | chr28:11334043-11333360 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 414 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 42, 57 |
| Conread position: | 10-710 |
| Cow position: | chr28:7757594-7758294 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 274 |
| Conread position: | 11-710 |
| Cow position: | chr28:7757427-7758126 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 472 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 605, 621 |
| Conread position: | 22-464 |
| Cow position: | chr28:9290274-9290714 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 278 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 40, 30 |
| Conread position: | 29-709 |
| Cow position: | chr28:9298845-9299510 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 24 |
| Conread position: | 65-679 |
| Cow position: | chr28:9290069-9290677 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 54 |
| Conread position: | 69-519 |
| Cow position: | chr28:9290237-9290685 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 76-660 |
| Cow position: | chr28:11333893-11333315 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 294, 306 |
| Conread position: | 76-703 |
| Cow position: | chr28:7758164-7758775 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 472, 150 |
| Conread position: | 78-683 |
| Cow position: | chr28:7810342-7810938 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 55 |
| Conread position: | 78-703 |
| Cow position: | chr28:7757578-7758203 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 297, 304 |
| Conread position: | 82-703 |
| Cow position: | chr28:7757414-7758035 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 290, 300 |
| Conread position: | 83-633 |
| Cow position: | chr28:7758323-7758873 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 473, 456 |
| Conread position: | 83-710 |
| Cow position: | chr28:34695911-34696538 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 285, 308 |
| Conread position: | 84-477 |
| Cow position: | chr28:33210228-33210622 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 254 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 199, 212 |
| Conread position: | 84-644 |
| Cow position: | chr28:34695996-34696556 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 85-710 |
| Cow position: | chr28:34695829-34696454 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 155 |
| Conread position: | 86-712 |
| Cow position: | chr28:7757334-7757960 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 56 |
| Conread position: | 108-716 |
| Cow position: | chr28:7810288-7810886 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 0 |
| Conread position: | 124-666 |
| Cow position: | chr28:34679602-34679070 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 334 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 183, 53 |
| Conread position: | 131-703 |
| Cow position: | chr28:9252982-9253554 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 131-716 |
| Cow position: | chr28:9252897-9253482 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 583 |
| Conread position: | 132-703 |
| Cow position: | chr28:9289720-9290283 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 149 |
| Conread position: | 133-706 |
| Cow position: | chr28:9290053-9290620 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 81 |
| Conread position: | 138-709 |
| Cow position: | chr28:11334167-11333595 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 150 |
| Conread position: | 141-712 |
| Cow position: | chr28:9298208-9298774 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 339 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 80, 33 |
| Conread position: | 146-554 |
| Cow position: | chr28:34679498-34679098 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 149, 114 |
| Conread position: | 157-710 |
| Cow position: | chr28:9298556-9299105 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 109 |
| Conread position: | 168-703 |
| Cow position: | chr28:34673355-34673890 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 334 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 54, 47 |
| Conread position: | 169-677 |
| Cow position: | chr28:7758325-7758832 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 447, 0 |
| Conread position: | 171-560 |
| Cow position: | chr28:33210231-33210621 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 254 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 195, 220 |
| Conread position: | 183-703 |
| Cow position: | chr28:11334206-11333686 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 315 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 186, 204 |
| Conread position: | 188-710 |
| Cow position: | chr28:7810284-7810797 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 0 |
| Conread position: | 210-710 |
| Cow position: | chr28:34679600-34679110 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 323 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 99, 59 |
| Conread position: | 223-710 |
| Cow position: | chr28:9252575-9253057 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 299 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 152, 167 |
| Conread position: | 252-645 |
| Cow position: | chr28:33210228-33210622 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 252 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 55, 51 |
| Conread position: | 310-699 |
| Cow position: | chr28:11334247-11333858 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 240 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 227, 255 |
| Conread position: | 344-710 |
| Cow position: | chr28:34673363-34673729 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 35, 47 |
| Conread position: | 399-683 |
| Cow position: | chr28:7810252-7810527 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 420-700 |
| Cow position: | chr28:33210228-33210508 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 481-716 |
| Cow position: | chr28:7810250-7810475 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 135, 39 |
Show alignments to all cow chromosomes.