Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10090H09.5 |
| Conread position: | 1-677 |
| Cow position: | chr3:62722240-62721564 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 43 |
| Conread position: | 1-709 |
| Cow position: | chr3:62742531-62743213 (view UCSC Genome Browser custom track) |
| Alignm length: | 712 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 134 |
| Conread position: | 2-710 |
| Cow position: | chr3:68045603-68046311 (view UCSC Genome Browser custom track) |
| Alignm length: | 712 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 314, 302 |
| Conread position: | 3-600 |
| Cow position: | chr3:68045772-68046367 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 313 |
| Conread position: | 3-625 |
| Cow position: | chr3:62742864-62743466 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 35 |
| Conread position: | 7-543 |
| Cow position: | chr3:68027183-68027719 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 334, 339 |
| Conread position: | 10-261 |
| Cow position: | chr3:68027522-68027771 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 30, 19 |
| Conread position: | 11-710 |
| Cow position: | chr3:68027019-68027718 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 361, 375 |
| Conread position: | 65-703 |
| Cow position: | chr3:62742842-62743459 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 157 |
| Conread position: | 67-709 |
| Cow position: | chr3:62722340-62721699 (view UCSC Genome Browser custom track) |
| Alignm length: | 645 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 417, 16 |
| Conread position: | 73-385 |
| Cow position: | chr3:62743165-62743476 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 269, 282 |
| Conread position: | 73-391 |
| Cow position: | chr3:68027417-68027735 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 74-703 |
| Cow position: | chr3:77351250-77350632 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 69 |
| Conread position: | 74-709 |
| Cow position: | chr3:68026998-68027634 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 49 |
| Conread position: | 76-627 |
| Cow position: | chr3:68045761-68046312 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 127 |
| Conread position: | 81-591 |
| Cow position: | chr3:77351076-77350576 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 320 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 98, 39 |
| Conread position: | 82-529 |
| Cow position: | chr3:62743095-62743534 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 22 |
| Conread position: | 82-710 |
| Cow position: | chr3:62722243-62721615 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 82-710 |
| Cow position: | chr3:62742277-62742900 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 609, 77 |
| Conread position: | 83-709 |
| Cow position: | chr3:62742361-62742983 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 528, 280 |
| Conread position: | 84-627 |
| Cow position: | chr3:68027176-68027719 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 148 |
| Conread position: | 106-658 |
| Cow position: | chr3:20194744-20195296 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 320 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 183, 177 |
| Conread position: | 132-710 |
| Cow position: | chr3:62722361-62721783 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 21 |
| Conread position: | 141-710 |
| Cow position: | chr3:77351267-77350706 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 27 |
| Conread position: | 212-717 |
| Cow position: | chr3:68045561-68046065 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 311 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 353, 338 |
| Conread position: | 216-717 |
| Cow position: | chr3:62742242-62742739 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 111 |
| Conread position: | 238-710 |
| Cow position: | chr3:68026995-68027466 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 6 |
| Conread position: | 241-501 |
| Cow position: | chr3:16020467-16020214 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 297-716 |
| Cow position: | chr3:62722364-62721946 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 24 |
| Conread position: | 326-625 |
| Cow position: | chr3:16020466-16020178 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 442-709 |
| Cow position: | chr3:62722387-62722120 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 69, 49 |
| Conread position: | 472-710 |
| Cow position: | chr3:68026976-68027214 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 15, 25 |
Show alignments to all cow chromosomes.