Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10090H09.5 |
| Conread position: | 1-472 |
| Cow position: | chr7:18390331-18390802 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 376, 381 |
| Conread position: | 1-509 |
| Cow position: | chr7:3180370-3180877 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 131 |
| Conread position: | 1-600 |
| Cow position: | chr7:1014856-1015455 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 470, 477 |
| Conread position: | 1-619 |
| Cow position: | chr7:1439637-1440257 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 124 |
| Conread position: | 1-666 |
| Cow position: | chr7:11601102-11600437 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 28 |
| Conread position: | 1-706 |
| Cow position: | chr7:8324818-8325523 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 123 |
| Conread position: | 1-709 |
| Cow position: | chr7:1014274-1014976 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 299, 290 |
| Conread position: | 1-709 |
| Cow position: | chr7:8243387-8244092 (view UCSC Genome Browser custom track) |
| Alignm length: | 717 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 42 |
| Conread position: | 1-710 |
| Cow position: | chr7:3180034-3180743 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 470, 477 |
| Conread position: | 1-710 |
| Cow position: | chr7:42879023-42878314 (view UCSC Genome Browser custom track) |
| Alignm length: | 710 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-592 |
| Cow position: | chr7:42878853-42878263 (view UCSC Genome Browser custom track) |
| Alignm length: | 593 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 372, 396 |
| Conread position: | 3-703 |
| Cow position: | chr7:1439557-1440257 (view UCSC Genome Browser custom track) |
| Alignm length: | 706 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 30 |
| Conread position: | 3-710 |
| Cow position: | chr7:8243222-8243928 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 432 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 220, 159 |
| Conread position: | 3-710 |
| Cow position: | chr7:8278019-8278717 (view UCSC Genome Browser custom track) |
| Alignm length: | 717 |
| Alignm identity: | 439 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 66, 46 |
| Conread position: | 7-543 |
| Cow position: | chr7:18390169-18390705 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 43 |
| Conread position: | 7-584 |
| Cow position: | chr7:11434809-11434239 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 355 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 45, 57 |
| Conread position: | 7-586 |
| Cow position: | chr7:11601012-11600432 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 55 |
| Conread position: | 10-467 |
| Cow position: | chr7:1439818-1440273 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 19 |
| Conread position: | 10-666 |
| Cow position: | chr7:42878930-42878274 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 208 |
| Conread position: | 10-709 |
| Cow position: | chr7:42879098-42878399 (view UCSC Genome Browser custom track) |
| Alignm length: | 700 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-710 |
| Cow position: | chr7:11601177-11600477 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 43 |
| Conread position: | 10-712 |
| Cow position: | chr7:3180127-3180827 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 479 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 48 |
| Conread position: | 13-708 |
| Cow position: | chr7:1439483-1440178 (view UCSC Genome Browser custom track) |
| Alignm length: | 702 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 105 |
| Conread position: | 25-710 |
| Cow position: | chr7:42879167-42878482 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 350, 366 |
| Conread position: | 30-710 |
| Cow position: | chr7:42879330-42878650 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 345, 355 |
| Conread position: | 35-710 |
| Cow position: | chr7:42879241-42878566 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 340, 350 |
| Conread position: | 55-290 |
| Cow position: | chr7:8325880-8326115 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 153, 170 |
| Conread position: | 62-710 |
| Cow position: | chr7:8324963-8325611 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 65 |
| Conread position: | 65-703 |
| Cow position: | chr7:8277913-8278549 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 54 |
| Conread position: | 65-706 |
| Cow position: | chr7:8277661-8278302 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 82 |
| Conread position: | 65-709 |
| Cow position: | chr7:1014668-1015312 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 65 |
| Conread position: | 65-710 |
| Cow position: | chr7:3179762-3180407 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 312, 317 |
| Conread position: | 65-712 |
| Cow position: | chr7:3179930-3180577 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 453 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 226 |
| Conread position: | 66-703 |
| Cow position: | chr7:1014753-1015390 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 138 |
| Conread position: | 67-543 |
| Cow position: | chr7:8325640-8326116 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 64 |
| Conread position: | 67-679 |
| Cow position: | chr7:1014838-1015450 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 149 |
| Conread position: | 67-710 |
| Cow position: | chr7:8277747-8278390 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 123 |
| Conread position: | 69-710 |
| Cow position: | chr7:3179850-3180491 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 73-709 |
| Cow position: | chr7:3180022-3180658 (view UCSC Genome Browser custom track) |
| Alignm length: | 638 |
| Alignm identity: | 450 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 141 |
| Conread position: | 76-627 |
| Cow position: | chr7:8278176-8278718 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 349 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 62, 52 |
| Conread position: | 76-712 |
| Cow position: | chr7:18390154-18390790 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 114 |
| Conread position: | 76-718 |
| Cow position: | chr7:8325229-8325871 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 71 |
| Conread position: | 77-619 |
| Cow position: | chr7:8243044-8243585 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 147 |
| Conread position: | 78-706 |
| Cow position: | chr7:8243213-8243840 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 397 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 67, 49 |
| Conread position: | 78-710 |
| Cow position: | chr7:1014267-1014893 (view UCSC Genome Browser custom track) |
| Alignm length: | 633 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 354, 0 |
| Conread position: | 82-709 |
| Cow position: | chr7:11601189-11600562 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 82-710 |
| Cow position: | chr7:8277258-8277886 (view UCSC Genome Browser custom track) |
| Alignm length: | 635 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 44 |
| Conread position: | 82-710 |
| Cow position: | chr7:18390076-18390704 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 48 |
| Conread position: | 82-712 |
| Cow position: | chr7:8277342-8277972 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 45 |
| Conread position: | 83-477 |
| Cow position: | chr7:1438332-1438726 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 242 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 84-715 |
| Cow position: | chr7:1014525-1015150 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 0 |
| Conread position: | 84-715 |
| Cow position: | chr7:8325489-8326120 (view UCSC Genome Browser custom track) |
| Alignm length: | 642 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 120 |
| Conread position: | 86-709 |
| Cow position: | chr7:1438085-1438706 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 374 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 299, 116 |
| Conread position: | 86-709 |
| Cow position: | chr7:1439472-1440095 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 116 |
| Conread position: | 86-718 |
| Cow position: | chr7:8324735-8325367 (view UCSC Genome Browser custom track) |
| Alignm length: | 640 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 41 |
| Conread position: | 89-627 |
| Cow position: | chr7:8242804-8243342 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 322 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 58, 38 |
| Conread position: | 108-709 |
| Cow position: | chr7:3179721-3180322 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 128-709 |
| Cow position: | chr7:1014647-1015228 (view UCSC Genome Browser custom track) |
| Alignm length: | 582 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 132-710 |
| Cow position: | chr7:1014237-1014809 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 336, 327 |
| Conread position: | 132-719 |
| Cow position: | chr7:3179661-3180247 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 575, 0 |
| Conread position: | 136-541 |
| Cow position: | chr7:1439859-1440263 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 116 |
| Conread position: | 136-710 |
| Cow position: | chr7:18390046-18390620 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 61 |
| Conread position: | 142-715 |
| Cow position: | chr7:1014079-1014652 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 344 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 476, 492 |
| Conread position: | 145-709 |
| Cow position: | chr7:1439447-1440011 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 139 |
| Conread position: | 146-710 |
| Cow position: | chr7:11601209-11600645 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 17 |
| Conread position: | 147-716 |
| Cow position: | chr7:18389973-18390541 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 565, 0 |
| Conread position: | 151-716 |
| Cow position: | chr7:42879377-42878813 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 109 |
| Conread position: | 162-718 |
| Cow position: | chr7:11434822-11434274 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 341 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 71, 61 |
| Conread position: | 164-700 |
| Cow position: | chr7:8277256-8277792 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 321 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 76, 42 |
| Conread position: | 171-710 |
| Cow position: | chr7:42879442-42878902 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 45 |
| Conread position: | 173-710 |
| Cow position: | chr7:8242804-8243341 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 335 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 68, 43 |
| Conread position: | 216-714 |
| Cow position: | chr7:1014237-1014729 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 255, 273 |
| Conread position: | 237-710 |
| Cow position: | chr7:11601285-11600813 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 232, 58 |
| Conread position: | 251-710 |
| Cow position: | chr7:42879447-42878986 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 101 |
| Conread position: | 307-715 |
| Cow position: | chr7:8242855-8243262 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 263 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 160, 5 |
| Conread position: | 314-710 |
| Cow position: | chr7:1439448-1439846 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 270 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 65, 72 |
| Conread position: | 401-713 |
| Cow position: | chr7:1439451-1439766 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 139 |
| Conread position: | 417-718 |
| Cow position: | chr7:8277257-8277558 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 223, 240 |
| Conread position: | 482-718 |
| Cow position: | chr7:11601209-11600974 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 232, 0 |
Show alignments to all cow chromosomes.