Cow genome map
Conread name: | Ss1.1-Ova1-OVRM10090H09.5 |
Conread position: | 1-447 |
Cow position: | chr8:48406705-48406259 (view UCSC Genome Browser custom track) |
Alignm length: | 450 |
Alignm identity: | 284 |
Alignm E-value: | 4.00001e-41 |
Alignm gaps (pig, cow): | 197, 220 |
Conread position: | 1-451 |
Cow position: | chr8:45201523-45201973 (view UCSC Genome Browser custom track) |
Alignm length: | 451 |
Alignm identity: | 291 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 1-587 |
Cow position: | chr8:55581075-55581661 (view UCSC Genome Browser custom track) |
Alignm length: | 589 |
Alignm identity: | 385 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 308, 283 |
Conread position: | 1-647 |
Cow position: | chr8:45201607-45202243 (view UCSC Genome Browser custom track) |
Alignm length: | 651 |
Alignm identity: | 398 |
Alignm E-value: | 5.60519e-45 |
Alignm gaps (pig, cow): | 57, 63 |
Conread position: | 1-709 |
Cow position: | chr8:46816634-46817343 (view UCSC Genome Browser custom track) |
Alignm length: | 710 |
Alignm identity: | 530 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 699, 0 |
Conread position: | 1-710 |
Cow position: | chr8:46815962-46816671 (view UCSC Genome Browser custom track) |
Alignm length: | 711 |
Alignm identity: | 491 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 72, 51 |
Conread position: | 1-710 |
Cow position: | chr8:46816130-46816839 (view UCSC Genome Browser custom track) |
Alignm length: | 710 |
Alignm identity: | 485 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 2-619 |
Cow position: | chr8:45201355-45201973 (view UCSC Genome Browser custom track) |
Alignm length: | 620 |
Alignm identity: | 413 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 521 |
Conread position: | 2-677 |
Cow position: | chr8:48406957-48406281 (view UCSC Genome Browser custom track) |
Alignm length: | 684 |
Alignm identity: | 423 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 44 |
Conread position: | 3-662 |
Cow position: | chr8:45201441-45202093 (view UCSC Genome Browser custom track) |
Alignm length: | 663 |
Alignm identity: | 436 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 61 |
Conread position: | 7-506 |
Cow position: | chr8:46816892-46817391 (view UCSC Genome Browser custom track) |
Alignm length: | 502 |
Alignm identity: | 330 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 63, 70 |
Conread position: | 7-703 |
Cow position: | chr8:48407203-48406507 (view UCSC Genome Browser custom track) |
Alignm length: | 699 |
Alignm identity: | 453 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 436, 459 |
Conread position: | 7-703 |
Cow position: | chr8:48407287-48406591 (view UCSC Genome Browser custom track) |
Alignm length: | 703 |
Alignm identity: | 441 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 384, 368 |
Conread position: | 7-709 |
Cow position: | chr8:46816472-46817174 (view UCSC Genome Browser custom track) |
Alignm length: | 705 |
Alignm identity: | 499 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 30, 26 |
Conread position: | 7-710 |
Cow position: | chr8:45201109-45201812 (view UCSC Genome Browser custom track) |
Alignm length: | 706 |
Alignm identity: | 481 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 282, 277 |
Conread position: | 7-710 |
Cow position: | chr8:46816388-46817091 (view UCSC Genome Browser custom track) |
Alignm length: | 705 |
Alignm identity: | 491 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 385, 391 |
Conread position: | 10-669 |
Cow position: | chr8:46816727-46817386 (view UCSC Genome Browser custom track) |
Alignm length: | 666 |
Alignm identity: | 469 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 27, 23 |
Conread position: | 10-710 |
Cow position: | chr8:46816223-46816923 (view UCSC Genome Browser custom track) |
Alignm length: | 701 |
Alignm identity: | 547 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 10-710 |
Cow position: | chr8:46816559-46817259 (view UCSC Genome Browser custom track) |
Alignm length: | 703 |
Alignm identity: | 492 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 42 |
Conread position: | 11-703 |
Cow position: | chr8:45201281-45201973 (view UCSC Genome Browser custom track) |
Alignm length: | 695 |
Alignm identity: | 468 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 18 |
Conread position: | 11-709 |
Cow position: | chr8:46815726-46816418 (view UCSC Genome Browser custom track) |
Alignm length: | 702 |
Alignm identity: | 551 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 243, 58 |
Conread position: | 11-710 |
Cow position: | chr8:45201197-45201896 (view UCSC Genome Browser custom track) |
Alignm length: | 702 |
Alignm identity: | 466 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 22 |
Conread position: | 11-710 |
Cow position: | chr8:46816056-46816755 (view UCSC Genome Browser custom track) |
Alignm length: | 705 |
Alignm identity: | 506 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 28, 22 |
Conread position: | 11-716 |
Cow position: | chr8:45201029-45201733 (view UCSC Genome Browser custom track) |
Alignm length: | 706 |
Alignm identity: | 473 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 701, 0 |
Conread position: | 13-709 |
Cow position: | chr8:48407533-48406837 (view UCSC Genome Browser custom track) |
Alignm length: | 699 |
Alignm identity: | 456 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 465, 448 |
Conread position: | 15-552 |
Cow position: | chr8:55581173-55581709 (view UCSC Genome Browser custom track) |
Alignm length: | 540 |
Alignm identity: | 346 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 22, 14 |
Conread position: | 22-690 |
Cow position: | chr8:48407020-48406352 (view UCSC Genome Browser custom track) |
Alignm length: | 671 |
Alignm identity: | 414 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 259, 276 |
Conread position: | 22-709 |
Cow position: | chr8:46816319-46817006 (view UCSC Genome Browser custom track) |
Alignm length: | 689 |
Alignm identity: | 481 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 353, 359 |
Conread position: | 60-709 |
Cow position: | chr8:45200826-45201475 (view UCSC Genome Browser custom track) |
Alignm length: | 652 |
Alignm identity: | 425 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 37, 44 |
Conread position: | 65-413 |
Cow position: | chr8:55581391-55581739 (view UCSC Genome Browser custom track) |
Alignm length: | 349 |
Alignm identity: | 230 |
Alignm E-value: | 2.00386e-43 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 65-509 |
Cow position: | chr8:55581307-55581751 (view UCSC Genome Browser custom track) |
Alignm length: | 446 |
Alignm identity: | 277 |
Alignm E-value: | 3e-40 |
Alignm gaps (pig, cow): | 153, 144 |
Conread position: | 65-683 |
Cow position: | chr8:48407397-48406779 (view UCSC Genome Browser custom track) |
Alignm length: | 621 |
Alignm identity: | 402 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 235, 226 |
Conread position: | 65-703 |
Cow position: | chr8:48407565-48406927 (view UCSC Genome Browser custom track) |
Alignm length: | 643 |
Alignm identity: | 425 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 218, 223 |
Conread position: | 65-712 |
Cow position: | chr8:55581055-55581702 (view UCSC Genome Browser custom track) |
Alignm length: | 649 |
Alignm identity: | 425 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 312, 321 |
Conread position: | 73-497 |
Cow position: | chr8:6958007-6957586 (view UCSC Genome Browser custom track) |
Alignm length: | 428 |
Alignm identity: | 266 |
Alignm E-value: | 4e-32 |
Alignm gaps (pig, cow): | 296, 205 |
Conread position: | 73-590 |
Cow position: | chr8:46816874-46817391 (view UCSC Genome Browser custom track) |
Alignm length: | 520 |
Alignm identity: | 373 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 207, 216 |
Conread position: | 73-710 |
Cow position: | chr8:55580895-55581532 (view UCSC Genome Browser custom track) |
Alignm length: | 640 |
Alignm identity: | 414 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 488, 462 |
Conread position: | 76-703 |
Cow position: | chr8:48407638-48407011 (view UCSC Genome Browser custom track) |
Alignm length: | 630 |
Alignm identity: | 416 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 287, 315 |
Conread position: | 82-701 |
Cow position: | chr8:55580988-55581607 (view UCSC Genome Browser custom track) |
Alignm length: | 620 |
Alignm identity: | 424 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 83-709 |
Cow position: | chr8:55580736-55581363 (view UCSC Genome Browser custom track) |
Alignm length: | 630 |
Alignm identity: | 411 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 9, 47 |
Conread position: | 84-709 |
Cow position: | chr8:48407042-48406417 (view UCSC Genome Browser custom track) |
Alignm length: | 631 |
Alignm identity: | 402 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 114, 137 |
Conread position: | 84-710 |
Cow position: | chr8:45201018-45201644 (view UCSC Genome Browser custom track) |
Alignm length: | 628 |
Alignm identity: | 432 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 123, 133 |
Conread position: | 86-709 |
Cow position: | chr8:45200936-45201559 (view UCSC Genome Browser custom track) |
Alignm length: | 625 |
Alignm identity: | 412 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 531, 545 |
Conread position: | 108-581 |
Cow position: | chr8:6958056-6957586 (view UCSC Genome Browser custom track) |
Alignm length: | 476 |
Alignm identity: | 298 |
Alignm E-value: | 3.99931e-42 |
Alignm gaps (pig, cow): | 190, 176 |
Conread position: | 108-710 |
Cow position: | chr8:55580846-55581448 (view UCSC Genome Browser custom track) |
Alignm length: | 606 |
Alignm identity: | 398 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 17, 32 |
Conread position: | 109-710 |
Cow position: | chr8:46815899-46816503 (view UCSC Genome Browser custom track) |
Alignm length: | 606 |
Alignm identity: | 422 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 59, 435 |
Conread position: | 132-712 |
Cow position: | chr8:45200814-45201394 (view UCSC Genome Browser custom track) |
Alignm length: | 584 |
Alignm identity: | 390 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 205, 200 |
Conread position: | 140-709 |
Cow position: | chr8:48407658-48407089 (view UCSC Genome Browser custom track) |
Alignm length: | 573 |
Alignm identity: | 368 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 326, 340 |
Conread position: | 189-619 |
Cow position: | chr8:6958059-6957630 (view UCSC Genome Browser custom track) |
Alignm length: | 434 |
Alignm identity: | 267 |
Alignm E-value: | 1e-32 |
Alignm gaps (pig, cow): | 357, 272 |
Conread position: | 230-677 |
Cow position: | chr8:46815526-46815963 (view UCSC Genome Browser custom track) |
Alignm length: | 450 |
Alignm identity: | 270 |
Alignm E-value: | 2e-22 |
Alignm gaps (pig, cow): | 26, 52 |
Conread position: | 238-710 |
Cow position: | chr8:55580808-55581280 (view UCSC Genome Browser custom track) |
Alignm length: | 473 |
Alignm identity: | 319 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 272-712 |
Cow position: | chr8:45200786-45201226 (view UCSC Genome Browser custom track) |
Alignm length: | 446 |
Alignm identity: | 286 |
Alignm E-value: | 9.99967e-42 |
Alignm gaps (pig, cow): | 206, 189 |
Conread position: | 308-710 |
Cow position: | chr8:48407658-48407256 (view UCSC Genome Browser custom track) |
Alignm length: | 404 |
Alignm identity: | 249 |
Alignm E-value: | 2e-33 |
Alignm gaps (pig, cow): | 168, 156 |
Conread position: | 310-710 |
Cow position: | chr8:55580796-55581196 (view UCSC Genome Browser custom track) |
Alignm length: | 402 |
Alignm identity: | 272 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 29, 38 |
Conread position: | 357-682 |
Cow position: | chr8:6958059-6957735 (view UCSC Genome Browser custom track) |
Alignm length: | 326 |
Alignm identity: | 213 |
Alignm E-value: | 2e-37 |
Alignm gaps (pig, cow): | 272, 0 |
Conread position: | 437-716 |
Cow position: | chr8:6958063-6957784 (view UCSC Genome Browser custom track) |
Alignm length: | 282 |
Alignm identity: | 189 |
Alignm E-value: | 5e-33 |
Alignm gaps (pig, cow): | 35, 41 |
Show alignments to all cow chromosomes.