Cow genome map

Conread name: Ss1.1-Ova1-OVRM10090H09.5

Conread position: 1-447
Cow position: chr8:48406705-48406259 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 284
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 197, 220

Conread position: 1-451
Cow position: chr8:45201523-45201973 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-587
Cow position: chr8:55581075-55581661 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 283

Conread position: 1-647
Cow position: chr8:45201607-45202243 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 398
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 57, 63

Conread position: 1-709
Cow position: chr8:46816634-46817343 (view UCSC Genome Browser custom track)
Alignm length: 710
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 699, 0

Conread position: 1-710
Cow position: chr8:46815962-46816671 (view UCSC Genome Browser custom track)
Alignm length: 711
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 51

Conread position: 1-710
Cow position: chr8:46816130-46816839 (view UCSC Genome Browser custom track)
Alignm length: 710
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 2-619
Cow position: chr8:45201355-45201973 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 521

Conread position: 2-677
Cow position: chr8:48406957-48406281 (view UCSC Genome Browser custom track)
Alignm length: 684
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 44

Conread position: 3-662
Cow position: chr8:45201441-45202093 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 61

Conread position: 7-506
Cow position: chr8:46816892-46817391 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 70

Conread position: 7-703
Cow position: chr8:48407203-48406507 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 436, 459

Conread position: 7-703
Cow position: chr8:48407287-48406591 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 384, 368

Conread position: 7-709
Cow position: chr8:46816472-46817174 (view UCSC Genome Browser custom track)
Alignm length: 705
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 26

Conread position: 7-710
Cow position: chr8:45201109-45201812 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 282, 277

Conread position: 7-710
Cow position: chr8:46816388-46817091 (view UCSC Genome Browser custom track)
Alignm length: 705
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 385, 391

Conread position: 10-669
Cow position: chr8:46816727-46817386 (view UCSC Genome Browser custom track)
Alignm length: 666
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 23

Conread position: 10-710
Cow position: chr8:46816223-46816923 (view UCSC Genome Browser custom track)
Alignm length: 701
Alignm identity: 547
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 10-710
Cow position: chr8:46816559-46817259 (view UCSC Genome Browser custom track)
Alignm length: 703
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 42

Conread position: 11-703
Cow position: chr8:45201281-45201973 (view UCSC Genome Browser custom track)
Alignm length: 695
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 18

Conread position: 11-709
Cow position: chr8:46815726-46816418 (view UCSC Genome Browser custom track)
Alignm length: 702
Alignm identity: 551
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 58

Conread position: 11-710
Cow position: chr8:45201197-45201896 (view UCSC Genome Browser custom track)
Alignm length: 702
Alignm identity: 466
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 22

Conread position: 11-710
Cow position: chr8:46816056-46816755 (view UCSC Genome Browser custom track)
Alignm length: 705
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 22

Conread position: 11-716
Cow position: chr8:45201029-45201733 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 701, 0

Conread position: 13-709
Cow position: chr8:48407533-48406837 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 465, 448

Conread position: 15-552
Cow position: chr8:55581173-55581709 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 14

Conread position: 22-690
Cow position: chr8:48407020-48406352 (view UCSC Genome Browser custom track)
Alignm length: 671
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 259, 276

Conread position: 22-709
Cow position: chr8:46816319-46817006 (view UCSC Genome Browser custom track)
Alignm length: 689
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 353, 359

Conread position: 60-709
Cow position: chr8:45200826-45201475 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 44

Conread position: 65-413
Cow position: chr8:55581391-55581739 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 230
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 65-509
Cow position: chr8:55581307-55581751 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 277
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 153, 144

Conread position: 65-683
Cow position: chr8:48407397-48406779 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 226

Conread position: 65-703
Cow position: chr8:48407565-48406927 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 218, 223

Conread position: 65-712
Cow position: chr8:55581055-55581702 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 312, 321

Conread position: 73-497
Cow position: chr8:6958007-6957586 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 266
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 296, 205

Conread position: 73-590
Cow position: chr8:46816874-46817391 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 216

Conread position: 73-710
Cow position: chr8:55580895-55581532 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 488, 462

Conread position: 76-703
Cow position: chr8:48407638-48407011 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 287, 315

Conread position: 82-701
Cow position: chr8:55580988-55581607 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 83-709
Cow position: chr8:55580736-55581363 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 47

Conread position: 84-709
Cow position: chr8:48407042-48406417 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 137

Conread position: 84-710
Cow position: chr8:45201018-45201644 (view UCSC Genome Browser custom track)
Alignm length: 628
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 123, 133

Conread position: 86-709
Cow position: chr8:45200936-45201559 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 531, 545

Conread position: 108-581
Cow position: chr8:6958056-6957586 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 298
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 190, 176

Conread position: 108-710
Cow position: chr8:55580846-55581448 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 32

Conread position: 109-710
Cow position: chr8:46815899-46816503 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 435

Conread position: 132-712
Cow position: chr8:45200814-45201394 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 200

Conread position: 140-709
Cow position: chr8:48407658-48407089 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 326, 340

Conread position: 189-619
Cow position: chr8:6958059-6957630 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 267
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 357, 272

Conread position: 230-677
Cow position: chr8:46815526-46815963 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 270
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 26, 52

Conread position: 238-710
Cow position: chr8:55580808-55581280 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 272-712
Cow position: chr8:45200786-45201226 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 286
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 206, 189

Conread position: 308-710
Cow position: chr8:48407658-48407256 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 249
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 168, 156

Conread position: 310-710
Cow position: chr8:55580796-55581196 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 38

Conread position: 357-682
Cow position: chr8:6958059-6957735 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 213
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 272, 0

Conread position: 437-716
Cow position: chr8:6958063-6957784 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 189
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 35, 41

Show alignments to all cow chromosomes.