Cow genome map

Conread name: Ss1.1-Ova1-OVRM10090H09.5

Conread position: 1-271
Cow position: chrX:25310311-25310581 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 180
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 38, 32

Conread position: 1-519
Cow position: chrX:29045175-29044657 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 279, 288

Conread position: 1-710
Cow position: chrX:25325082-25324373 (view UCSC Genome Browser custom track)
Alignm length: 712
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 132

Conread position: 1-710
Cow position: chrX:25325166-25324457 (view UCSC Genome Browser custom track)
Alignm length: 713
Alignm identity: 545
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 28

Conread position: 1-710
Cow position: chrX:25325250-25324541 (view UCSC Genome Browser custom track)
Alignm length: 712
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 298, 283

Conread position: 1-710
Cow position: chrX:25325418-25324709 (view UCSC Genome Browser custom track)
Alignm length: 711
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 28

Conread position: 1-719
Cow position: chrX:25325670-25324953 (view UCSC Genome Browser custom track)
Alignm length: 719
Alignm identity: 672
Alignm E-value: 0
Alignm gaps (pig, cow): 711, 0

Conread position: 2-710
Cow position: chrX:25325837-25325129 (view UCSC Genome Browser custom track)
Alignm length: 712
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 41

Conread position: 3-488
Cow position: chrX:25324660-25324179 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 413, 0

Conread position: 3-678
Cow position: chrX:25309893-25310568 (view UCSC Genome Browser custom track)
Alignm length: 680
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 26

Conread position: 7-597
Cow position: chrX:25309981-25310571 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 207

Conread position: 7-685
Cow position: chrX:25324908-25324230 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 10-440
Cow position: chrX:29045082-29044652 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 10-596
Cow position: chrX:29045250-29044663 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 99

Conread position: 10-703
Cow position: chrX:25325325-25324632 (view UCSC Genome Browser custom track)
Alignm length: 694
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 11-683
Cow position: chrX:29045333-29044661 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 66

Conread position: 11-712
Cow position: chrX:25309733-25310434 (view UCSC Genome Browser custom track)
Alignm length: 706
Alignm identity: 471
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 24

Conread position: 13-541
Cow position: chrX:12627535-12628062 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 321
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 218, 119

Conread position: 22-709
Cow position: chrX:29045721-29045055 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 262

Conread position: 26-709
Cow position: chrX:25325729-25325045 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 443, 435

Conread position: 65-436
Cow position: chrX:25310207-25310578 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 151

Conread position: 65-715
Cow position: chrX:29045762-29045134 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 326, 321

Conread position: 67-710
Cow position: chrX:12627338-12627979 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 395
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 72, 57

Conread position: 67-712
Cow position: chrX:12627422-12628066 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 387
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 336, 77

Conread position: 73-709
Cow position: chrX:25325430-25324794 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 325

Conread position: 73-710
Cow position: chrX:25325514-25324877 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 304, 312

Conread position: 76-362
Cow position: chrX:25310302-25310587 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 189
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 281, 0

Conread position: 76-710
Cow position: chrX:25324923-25324289 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 78-703
Cow position: chrX:25309884-25310509 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 227

Conread position: 78-715
Cow position: chrX:25309716-25310352 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 42

Conread position: 82-448
Cow position: chrX:14181308-14180942 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 220
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 150, 138

Conread position: 82-538
Cow position: chrX:29045829-29045373 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 51

Conread position: 82-619
Cow position: chrX:12627520-12628056 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 334
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 57, 45

Conread position: 84-523
Cow position: chrX:25310142-25310581 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 119

Conread position: 84-542
Cow position: chrX:13826696-13826238 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 266
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 148, 138

Conread position: 84-710
Cow position: chrX:13826948-13826322 (view UCSC Genome Browser custom track)
Alignm length: 629
Alignm identity: 374
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 207, 200

Conread position: 110-715
Cow position: chrX:29045318-29044714 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 174

Conread position: 138-715
Cow position: chrX:12627325-12627900 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 350
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 142, 149

Conread position: 142-715
Cow position: chrX:29045367-29044798 (view UCSC Genome Browser custom track)
Alignm length: 574
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 144-710
Cow position: chrX:25309700-25310264 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 397, 32

Conread position: 148-710
Cow position: chrX:25325859-25325297 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 16

Conread position: 153-620
Cow position: chrX:29045842-29045375 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 232

Conread position: 198-703
Cow position: chrX:25309668-25310173 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 22

Conread position: 231-532
Cow position: chrX:14181243-14180942 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 186
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 85, 80

Conread position: 321-719
Cow position: chrX:29045842-29045444 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.