Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10181H07.5 |
| Conread position: | 131-668 |
| Cow position: | chr12:34174739-34175285 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 298 |
| Conread position: | 154-668 |
| Cow position: | chr12:23161491-23160971 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 358 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 37, 19 |
| Conread position: | 157-668 |
| Cow position: | chr12:27854541-27854023 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 334 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 10, 27 |
| Conread position: | 160-380 |
| Cow position: | chr12:48471459-48471236 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 170-400 |
| Cow position: | chr12:14660914-14660678 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 40, 164 |
| Conread position: | 170-405 |
| Cow position: | chr12:22568317-22568078 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 50, 97 |
| Conread position: | 170-414 |
| Cow position: | chr12:1888123-1887873 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 165 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 170-414 |
| Cow position: | chr12:24994527-24994277 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 170-435 |
| Cow position: | chr12:34174553-34174821 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 50, 177 |
| Conread position: | 170-668 |
| Cow position: | chr12:22204276-22203773 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 13 |
| Conread position: | 170-668 |
| Cow position: | chr12:27931473-27930966 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 331 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 17, 13 |
| Conread position: | 170-668 |
| Cow position: | chr12:42858100-42857595 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 333 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 17, 13 |
| Conread position: | 171-384 |
| Cow position: | chr12:3362375-3362589 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 64, 22 |
| Conread position: | 171-670 |
| Cow position: | chr12:3209405-3209909 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 319 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 20, 322 |
| Conread position: | 172-668 |
| Cow position: | chr12:21253147-21252643 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 327 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 48, 25 |
| Conread position: | 176-396 |
| Cow position: | chr12:21943180-21943410 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 59, 226 |
| Conread position: | 183-404 |
| Cow position: | chr12:30685185-30685416 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 26, 11 |
| Conread position: | 183-414 |
| Cow position: | chr12:21482555-21482787 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 52, 24 |
| Conread position: | 183-668 |
| Cow position: | chr12:6405196-6404697 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 323 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 26, 157 |
| Conread position: | 183-668 |
| Cow position: | chr12:11099666-11100178 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 356 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 29, 160 |
| Conread position: | 183-668 |
| Cow position: | chr12:21210104-21210605 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 332 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 34, 236 |
| Conread position: | 183-668 |
| Cow position: | chr12:21429448-21429950 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 236 |
| Conread position: | 183-668 |
| Cow position: | chr12:32654996-32655487 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 323 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 52, 90 |
| Conread position: | 183-668 |
| Cow position: | chr12:42606808-42606309 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 285 |
| Conread position: | 184-403 |
| Cow position: | chr12:17980149-17980383 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 17, 209 |
| Conread position: | 184-433 |
| Cow position: | chr12:23140725-23140468 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 184-652 |
| Cow position: | chr12:37560454-37560929 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 328 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 25, 79 |
| Conread position: | 185-414 |
| Cow position: | chr12:35345979-35346216 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 46, 213 |
| Conread position: | 190-400 |
| Cow position: | chr12:1776509-1776294 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 41, 114 |
| Conread position: | 204-420 |
| Cow position: | chr12:24433608-24433393 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 182, 23 |
| Conread position: | 204-665 |
| Cow position: | chr12:21092250-21091798 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 289 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 201, 30 |
| Conread position: | 204-668 |
| Cow position: | chr12:25098998-25098537 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 288 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 130, 29 |
| Conread position: | 204-670 |
| Cow position: | chr12:19870365-19870824 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 301 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 323, 28 |
| Conread position: | 231-420 |
| Cow position: | chr12:3971037-3970850 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 165, 54 |
| Conread position: | 232-372 |
| Cow position: | chr12:32391342-32391480 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 232-384 |
| Cow position: | chr12:15950304-15950152 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 232-504 |
| Cow position: | chr12:466772-466514 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 17, 40 |
| Conread position: | 234-425 |
| Cow position: | chr12:32677490-32677298 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 147, 105 |
| Conread position: | 236-429 |
| Cow position: | chr12:43913345-43913541 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 98, 104 |
| Conread position: | 238-668 |
| Cow position: | chr12:20461721-20461291 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 282 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 102, 91 |
| Conread position: | 508-665 |
| Cow position: | chr12:21427815-21427654 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 508-665 |
| Cow position: | chr12:22519203-22519043 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 76, 93 |
| Conread position: | 508-668 |
| Cow position: | chr12:23139397-23139233 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 79, 148 |
| Conread position: | 508-668 |
| Cow position: | chr12:25261742-25261577 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 509-668 |
| Cow position: | chr12:8676311-8676143 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 511-665 |
| Cow position: | chr12:15950026-15949874 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 512-668 |
| Cow position: | chr12:20996319-20996163 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 80, 93 |
Show alignments to all cow chromosomes.