Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10181H07.5 |
| Conread position: | 157-665 |
| Cow position: | chr13:47575286-47575815 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 348 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 10, 36 |
| Conread position: | 158-670 |
| Cow position: | chr13:14177646-14177142 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 336 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 9, 77 |
| Conread position: | 160-384 |
| Cow position: | chr13:20541051-20540819 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 160-414 |
| Cow position: | chr13:31732688-31732430 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 11, 28 |
| Conread position: | 160-668 |
| Cow position: | chr13:4942590-4943107 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 334 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 11, 24 |
| Conread position: | 160-668 |
| Cow position: | chr13:33335105-33334600 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 334 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 7, 20 |
| Conread position: | 160-668 |
| Cow position: | chr13:60648600-60648083 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 295 |
| Conread position: | 169-367 |
| Cow position: | chr13:25692878-25693092 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 169-668 |
| Cow position: | chr13:31508125-31508628 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 320 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 70, 289 |
| Conread position: | 169-668 |
| Cow position: | chr13:34030812-34031315 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 339 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 28, 188 |
| Conread position: | 170-378 |
| Cow position: | chr13:42217466-42217253 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 170-384 |
| Cow position: | chr13:2387589-2387370 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 10, 28 |
| Conread position: | 170-384 |
| Cow position: | chr13:11388214-11388432 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 170-384 |
| Cow position: | chr13:17309680-17309898 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 170-384 |
| Cow position: | chr13:50193179-50192963 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 45, 99 |
| Conread position: | 170-384 |
| Cow position: | chr13:60468642-60468861 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 50, 174 |
| Conread position: | 170-414 |
| Cow position: | chr13:21697480-21697730 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 170 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 170-414 |
| Cow position: | chr13:34324359-34324112 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 170-663 |
| Cow position: | chr13:13326145-13326638 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 13 |
| Conread position: | 170-668 |
| Cow position: | chr13:14401890-14401382 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 329 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 7, 69 |
| Conread position: | 170-668 |
| Cow position: | chr13:33524740-33524237 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 323 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 50, 286 |
| Conread position: | 170-668 |
| Cow position: | chr13:34041118-34040614 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 13 |
| Conread position: | 170-668 |
| Cow position: | chr13:49974882-49975397 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 177 |
| Conread position: | 170-668 |
| Cow position: | chr13:50110669-50111182 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 346 |
| Conread position: | 171-668 |
| Cow position: | chr13:6358341-6358845 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 313 |
| Conread position: | 171-668 |
| Cow position: | chr13:32923918-32923411 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 333 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 58, 29 |
| Conread position: | 173-431 |
| Cow position: | chr13:6666920-6666656 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 44, 161 |
| Conread position: | 173-668 |
| Cow position: | chr13:11797496-11796986 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 339 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 36, 21 |
| Conread position: | 174-665 |
| Cow position: | chr13:49494966-49494460 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 295 |
| Conread position: | 175-380 |
| Cow position: | chr13:50661491-50661705 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 60, 143 |
| Conread position: | 176-612 |
| Cow position: | chr13:14186223-14186664 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 275 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 20, 242 |
| Conread position: | 176-668 |
| Cow position: | chr13:5500777-5500277 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 280 |
| Conread position: | 178-379 |
| Cow position: | chr13:3534672-3534459 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 183-365 |
| Cow position: | chr13:678971-679167 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 183-380 |
| Cow position: | chr13:15543760-15543971 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 26, 160 |
| Conread position: | 183-414 |
| Cow position: | chr13:34938661-34938903 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 26, 157 |
| Conread position: | 183-429 |
| Cow position: | chr13:3482598-3482355 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 175 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 20, 51 |
| Conread position: | 183-431 |
| Cow position: | chr13:31729672-31729420 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 26, 84 |
| Conread position: | 183-668 |
| Cow position: | chr13:21838978-21838491 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 319 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 37, 228 |
| Conread position: | 183-668 |
| Cow position: | chr13:32984124-32983622 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 282 |
| Conread position: | 183-668 |
| Cow position: | chr13:34343126-34343630 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 322 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 26, 160 |
| Conread position: | 183-668 |
| Cow position: | chr13:35758505-35759000 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 156 |
| Conread position: | 185-506 |
| Cow position: | chr13:728460-728768 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 44, 150 |
| Conread position: | 185-655 |
| Cow position: | chr13:60423977-60424448 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 305 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 24, 235 |
| Conread position: | 185-657 |
| Cow position: | chr13:43981863-43981386 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 318 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 16, 220 |
| Conread position: | 188-668 |
| Cow position: | chr13:32735947-32735470 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 320 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 157, 24 |
| Conread position: | 190-401 |
| Cow position: | chr13:34049959-34050159 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 156 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 201, 23 |
| Conread position: | 212-668 |
| Cow position: | chr13:57025096-57025573 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 320 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 6, 176 |
| Conread position: | 228-668 |
| Cow position: | chr13:22184059-22183610 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 17 |
| Conread position: | 231-432 |
| Cow position: | chr13:11739196-11739396 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 159, 107 |
| Conread position: | 232-668 |
| Cow position: | chr13:15449870-15449451 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 297 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 32, 116 |
| Conread position: | 234-400 |
| Cow position: | chr13:43590604-43590767 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 152, 29 |
| Conread position: | 236-668 |
| Cow position: | chr13:34869259-34869684 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 241, 150 |
| Conread position: | 238-414 |
| Cow position: | chr13:9298735-9298912 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 101, 91 |
| Conread position: | 238-665 |
| Cow position: | chr13:30304486-30304915 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 152, 176 |
| Conread position: | 306-670 |
| Cow position: | chr13:11246798-11246429 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 265 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 201, 81 |
| Conread position: | 313-668 |
| Cow position: | chr13:21907835-21907456 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 260 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 76, 153 |
| Conread position: | 433-668 |
| Cow position: | chr13:14523673-14523428 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 62, 188 |
| Conread position: | 435-670 |
| Cow position: | chr13:53553064-53552804 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 64, 136 |
| Conread position: | 448-668 |
| Cow position: | chr13:36348663-36348427 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 488-668 |
| Cow position: | chr13:17309954-17310138 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 107 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 508-665 |
| Cow position: | chr13:3760071-3759910 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 508-665 |
| Cow position: | chr13:16921016-16921177 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 508-665 |
| Cow position: | chr13:49613978-49613817 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 508-665 |
| Cow position: | chr13:54239883-54239721 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 508-668 |
| Cow position: | chr13:4485419-4485581 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 84, 57 |
| Conread position: | 508-668 |
| Cow position: | chr13:6666581-6666417 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 508-668 |
| Cow position: | chr13:11388763-11388927 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 508-668 |
| Cow position: | chr13:15922900-15922736 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 508-668 |
| Cow position: | chr13:18331550-18331386 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 508-668 |
| Cow position: | chr13:23454993-23455157 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 508-668 |
| Cow position: | chr13:31729347-31729184 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 84, 12 |
| Conread position: | 508-668 |
| Cow position: | chr13:61952818-61952980 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 76, 133 |
| Conread position: | 508-670 |
| Cow position: | chr13:16252959-16252795 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 127 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 30, 20 |
| Conread position: | 508-670 |
| Cow position: | chr13:34050259-34050426 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 135 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 509-672 |
| Cow position: | chr13:15558899-15559066 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 511-664 |
| Cow position: | chr13:24236006-24236164 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 511-668 |
| Cow position: | chr13:20540272-20540117 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 86, 9 |
| Conread position: | 511-668 |
| Cow position: | chr13:21058230-21058390 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 76, 108 |
| Conread position: | 511-668 |
| Cow position: | chr13:59979701-59979540 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 76, 0 |
Show alignments to all cow chromosomes.