Cow genome map

Conread name: Ss1.1-Ova1-OVRM10181H07.5

Conread position: 156-380
Cow position: chr16:56120388-56120618 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 163
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 15, 24

Conread position: 157-668
Cow position: chr16:54324602-54324076 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 351
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 14, 27

Conread position: 160-377
Cow position: chr16:10565042-10564824 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 160
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 47, 110

Conread position: 160-668
Cow position: chr16:23535158-23534662 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 326
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 11, 20

Conread position: 160-668
Cow position: chr16:25086353-25086864 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 320
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 7, 63

Conread position: 160-668
Cow position: chr16:28470334-28469808 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 338
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 7, 24

Conread position: 166-657
Cow position: chr16:12668045-12667536 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 334
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 16, 62

Conread position: 166-665
Cow position: chr16:25258536-25259052 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 344
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 19, 102

Conread position: 166-668
Cow position: chr16:23671441-23671949 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 16

Conread position: 166-670
Cow position: chr16:47627912-47627409 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 343
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 16, 228

Conread position: 169-415
Cow position: chr16:44669654-44669397 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 177
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 13, 232

Conread position: 169-665
Cow position: chr16:27594253-27594757 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 243

Conread position: 169-668
Cow position: chr16:25442367-25442878 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 333
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 40, 19

Conread position: 170-384
Cow position: chr16:28196494-28196275 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 153
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 47, 0

Conread position: 170-414
Cow position: chr16:5527641-5527389 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 176
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 65, 23

Conread position: 170-414
Cow position: chr16:10374849-10374605 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 168
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 49, 94

Conread position: 170-653
Cow position: chr16:19778902-19778413 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 246

Conread position: 170-664
Cow position: chr16:15185825-15186321 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 327
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 17, 165

Conread position: 170-668
Cow position: chr16:3088457-3087951 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 322

Conread position: 170-668
Cow position: chr16:5662586-5663092 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 288

Conread position: 170-668
Cow position: chr16:8815358-8814858 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 337
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 39, 17

Conread position: 170-668
Cow position: chr16:14665066-14664573 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 323
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 39, 30

Conread position: 170-668
Cow position: chr16:23984047-23984555 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 333
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 17, 13

Conread position: 170-668
Cow position: chr16:37480109-37479603 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 164

Conread position: 171-402
Cow position: chr16:19149846-19149617 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 161
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 34, 64

Conread position: 171-402
Cow position: chr16:55049151-55048922 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 159
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 30, 44

Conread position: 171-670
Cow position: chr16:3330684-3331185 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 319
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 39, 17

Conread position: 172-385
Cow position: chr16:23809103-23809321 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 154
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 29, 113

Conread position: 172-668
Cow position: chr16:2238015-2237519 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 331
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 54, 41

Conread position: 173-380
Cow position: chr16:39366127-39365914 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 154
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 20, 11

Conread position: 173-665
Cow position: chr16:29047774-29048273 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 334
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 56, 14

Conread position: 173-670
Cow position: chr16:41753865-41753359 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 250

Conread position: 174-384
Cow position: chr16:29034686-29034904 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 149
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 38, 0

Conread position: 176-378
Cow position: chr16:28436715-28436502 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 156
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 19, 0

Conread position: 177-665
Cow position: chr16:34531047-34531537 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 322
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 24, 18

Conread position: 177-668
Cow position: chr16:33274-33784 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 276

Conread position: 179-668
Cow position: chr16:15568011-15568506 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 319
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 8, 145

Conread position: 183-396
Cow position: chr16:26978876-26979091 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 159
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 46, 30

Conread position: 183-400
Cow position: chr16:1959864-1959639 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 156
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 26, 217

Conread position: 183-401
Cow position: chr16:41762577-41762802 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 171
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 53, 161

Conread position: 183-403
Cow position: chr16:39824676-39824906 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 182
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 29, 160

Conread position: 183-424
Cow position: chr16:34504299-34504548 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 185
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 47, 12

Conread position: 183-480
Cow position: chr16:16898210-16898519 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 217
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 10, 218

Conread position: 183-664
Cow position: chr16:27732631-27732130 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 324
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 26, 160

Conread position: 183-665
Cow position: chr16:7675698-7675213 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 318
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 23, 43

Conread position: 183-668
Cow position: chr16:40295410-40294913 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 325
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 26, 104

Conread position: 183-670
Cow position: chr16:337941-338428 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 333
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 24, 91

Conread position: 185-668
Cow position: chr16:27823493-27823003 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 326
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 17, 191

Conread position: 185-668
Cow position: chr16:41572147-41572653 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 8

Conread position: 185-668
Cow position: chr16:49221148-49220666 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 311
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 41, 84

Conread position: 185-668
Cow position: chr16:51084910-51085404 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 318
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 24, 222

Conread position: 186-436
Cow position: chr16:25172113-25172366 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 183
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 32, 17

Conread position: 186-665
Cow position: chr16:5119256-5118769 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 213

Conread position: 188-506
Cow position: chr16:28158331-28158647 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 217
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 43, 78

Conread position: 188-665
Cow position: chr16:41685492-41685017 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 309
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 67, 44

Conread position: 200-668
Cow position: chr16:18497544-18497064 (view UCSC Genome Browser custom track)
Alignm length: 489
Alignm identity: 316
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 34, 15

Conread position: 204-400
Cow position: chr16:16270347-16270153 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 137
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 186, 9

Conread position: 204-430
Cow position: chr16:12955769-12955543 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 156
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 35, 165

Conread position: 204-505
Cow position: chr16:29984797-29985103 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 208
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 31, 167

Conread position: 204-610
Cow position: chr16:25933968-25934376 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 266
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 25, 62

Conread position: 204-668
Cow position: chr16:20202760-20203225 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 306
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 122, 9

Conread position: 204-670
Cow position: chr16:5890788-5891252 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 301
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 180, 23

Conread position: 209-389
Cow position: chr16:49255445-49255264 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 128
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 26, 160

Conread position: 218-414
Cow position: chr16:48333793-48333597 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 143
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 28, 14

Conread position: 220-668
Cow position: chr16:3828535-3828081 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 301
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 160, 14

Conread position: 232-378
Cow position: chr16:16991662-16991808 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 107
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 234-494
Cow position: chr16:5871703-5871947 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 176
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 152, 0

Conread position: 236-668
Cow position: chr16:28169504-28169069 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 284
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 154, 170

Conread position: 252-665
Cow position: chr16:20193338-20192925 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 271
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 134, 154

Conread position: 272-661
Cow position: chr16:4474752-4474356 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 259
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 68, 57

Conread position: 277-672
Cow position: chr16:7465463-7465862 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 260
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 21, 128

Conread position: 289-661
Cow position: chr16:51039207-51039586 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 75

Conread position: 306-670
Cow position: chr16:17949364-17948996 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 232
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 84, 99

Conread position: 447-668
Cow position: chr16:23250974-23250731 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 174
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 58, 0

Conread position: 448-670
Cow position: chr16:7379622-7379391 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 157
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 59, 121

Conread position: 503-668
Cow position: chr16:25343055-25343222 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 131
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 89, 6

Conread position: 508-665
Cow position: chr16:18580921-18580760 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 124
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 77, 0

Conread position: 508-665
Cow position: chr16:20200215-20200377 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 120
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 77, 0

Conread position: 508-668
Cow position: chr16:1959537-1959375 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 80, 92

Conread position: 508-668
Cow position: chr16:20641269-20641435 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 79, 0

Conread position: 508-668
Cow position: chr16:22800584-22800423 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 115
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 101, 0

Conread position: 508-668
Cow position: chr16:26664815-26664979 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 124
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 83, 0

Conread position: 508-668
Cow position: chr16:28158670-28158834 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 77, 0

Conread position: 508-668
Cow position: chr16:28195217-28195054 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 79, 93

Conread position: 508-668
Cow position: chr16:28436039-28435877 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 131
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 79, 103

Conread position: 508-668
Cow position: chr16:29034988-29035152 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 79, 0

Conread position: 508-668
Cow position: chr16:40556824-40556664 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 508-668
Cow position: chr16:41162381-41162218 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 117
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 84, 0

Conread position: 508-668
Cow position: chr16:42747131-42746970 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 79, 126

Conread position: 508-668
Cow position: chr16:43896175-43896016 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 125
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 89, 0

Conread position: 508-668
Cow position: chr16:44669036-44668867 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 123
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 508-668
Cow position: chr16:49744356-49744192 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 118
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 78, 0

Conread position: 508-668
Cow position: chr16:52525318-52525480 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 84, 39

Conread position: 508-670
Cow position: chr16:16229395-16229556 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 124
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 58, 0

Conread position: 508-672
Cow position: chr16:3770928-3770761 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 124
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 84, 163

Conread position: 509-665
Cow position: chr16:5486850-5487001 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 87, 0

Conread position: 511-665
Cow position: chr16:18618034-18617877 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 76, 8

Conread position: 511-670
Cow position: chr16:37451981-37451820 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 116
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 81, 0

Conread position: 513-672
Cow position: chr16:25172391-25172547 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 124
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 74, 91

Conread position: 515-665
Cow position: chr16:18279460-18279306 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 112
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 72, 0

Conread position: 515-668
Cow position: chr16:23809454-23809612 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 11, 0

Show alignments to all cow chromosomes.