Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10181H07.5 |
| Conread position: | 160-384 |
| Cow position: | chr17:3654979-3654749 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 160-405 |
| Cow position: | chr17:15437094-15437346 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 160-663 |
| Cow position: | chr17:4061414-4061933 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 329 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 11, 197 |
| Conread position: | 160-668 |
| Cow position: | chr17:15852003-15852520 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 334 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 7, 24 |
| Conread position: | 160-668 |
| Cow position: | chr17:23323138-23322621 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 263 |
| Conread position: | 160-668 |
| Cow position: | chr17:24028690-24028178 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 338 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 7, 20 |
| Conread position: | 160-668 |
| Cow position: | chr17:27793471-27792959 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 295 |
| Conread position: | 169-663 |
| Cow position: | chr17:15372530-15373021 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 319 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 16, 39 |
| Conread position: | 169-668 |
| Cow position: | chr17:182896-183398 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 324 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 51, 14 |
| Conread position: | 170-384 |
| Cow position: | chr17:1704191-1704411 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 170-384 |
| Cow position: | chr17:9080099-9079880 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 170-662 |
| Cow position: | chr17:13967248-13967745 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 319 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 51, 169 |
| Conread position: | 170-665 |
| Cow position: | chr17:14936649-14936149 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 27 |
| Conread position: | 170-665 |
| Cow position: | chr17:39049536-39050041 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 249 |
| Conread position: | 170-665 |
| Cow position: | chr17:43989823-43990320 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 288 |
| Conread position: | 170-668 |
| Cow position: | chr17:28027185-28026680 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 333 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 7, 166 |
| Conread position: | 170-668 |
| Cow position: | chr17:40806130-40806633 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 329 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 62, 13 |
| Conread position: | 171-583 |
| Cow position: | chr17:11086404-11085989 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 263 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 58, 14 |
| Conread position: | 171-603 |
| Cow position: | chr17:34157444-34157882 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 288 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 49, 251 |
| Conread position: | 172-665 |
| Cow position: | chr17:11784181-11784691 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 333 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 48, 295 |
| Conread position: | 180-504 |
| Cow position: | chr17:4675429-4675752 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 233 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 12, 216 |
| Conread position: | 183-378 |
| Cow position: | chr17:23038893-23039097 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 26, 5 |
| Conread position: | 183-414 |
| Cow position: | chr17:6261186-6261430 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 26, 145 |
| Conread position: | 183-414 |
| Cow position: | chr17:14240830-14241076 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 183-668 |
| Cow position: | chr17:2246756-2246262 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 24 |
| Conread position: | 183-668 |
| Cow position: | chr17:24783487-24783988 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 282 |
| Conread position: | 185-402 |
| Cow position: | chr17:1656536-1656323 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 199, 8 |
| Conread position: | 185-414 |
| Cow position: | chr17:3707459-3707225 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 10, 189 |
| Conread position: | 185-607 |
| Cow position: | chr17:2263465-2263905 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 291 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 8, 247 |
| Conread position: | 185-663 |
| Cow position: | chr17:24310179-24310653 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 312 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 50, 71 |
| Conread position: | 189-431 |
| Cow position: | chr17:24335896-24336142 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 40, 74 |
| Conread position: | 193-665 |
| Cow position: | chr17:2169764-2170245 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 123 |
| Conread position: | 204-665 |
| Cow position: | chr17:6121148-6121610 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 12 |
| Conread position: | 205-372 |
| Cow position: | chr17:14039684-14039509 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 28, 81 |
| Conread position: | 205-652 |
| Cow position: | chr17:29302107-29302568 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 308 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 28, 259 |
| Conread position: | 205-668 |
| Cow position: | chr17:135981-136453 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 304 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 34, 132 |
| Conread position: | 205-668 |
| Cow position: | chr17:19267484-19267017 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 304 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 25, 55 |
| Conread position: | 216-414 |
| Cow position: | chr17:39812-40011 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 170, 0 |
| Conread position: | 231-657 |
| Cow position: | chr17:4783432-4782998 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 277, 16 |
| Conread position: | 231-668 |
| Cow position: | chr17:20403807-20404231 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 279 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 178, 218 |
| Conread position: | 232-403 |
| Cow position: | chr17:22133653-22133826 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 46, 87 |
| Conread position: | 236-384 |
| Cow position: | chr17:17257298-17257150 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 254-665 |
| Cow position: | chr17:2554865-2554451 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 273 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 125, 140 |
| Conread position: | 280-425 |
| Cow position: | chr17:19366694-19366840 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 402-668 |
| Cow position: | chr17:19980601-19980312 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 426-663 |
| Cow position: | chr17:1656185-1655937 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 182 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 77, 51 |
| Conread position: | 429-670 |
| Cow position: | chr17:13706322-13706563 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 70, 17 |
| Conread position: | 433-668 |
| Cow position: | chr17:6070110-6070356 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 434-670 |
| Cow position: | chr17:4346011-4345764 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 71, 98 |
| Conread position: | 449-668 |
| Cow position: | chr17:21769605-21769380 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 469-665 |
| Cow position: | chr17:3235562-3235765 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 25, 131 |
| Conread position: | 508-655 |
| Cow position: | chr17:17257027-17256876 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 508-665 |
| Cow position: | chr17:40103-40264 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 508-665 |
| Cow position: | chr17:6077768-6077923 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 508-665 |
| Cow position: | chr17:8210304-8210465 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 508-665 |
| Cow position: | chr17:16153470-16153632 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 508-665 |
| Cow position: | chr17:34574406-34574567 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 508-665 |
| Cow position: | chr17:45271456-45271295 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 508-668 |
| Cow position: | chr17:2581492-2581656 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 508-668 |
| Cow position: | chr17:6261522-6261675 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 508-668 |
| Cow position: | chr17:14241469-14241632 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 508-668 |
| Cow position: | chr17:34159389-34159555 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 508-669 |
| Cow position: | chr17:19366937-19367101 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 508-670 |
| Cow position: | chr17:1458042-1458208 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 509-665 |
| Cow position: | chr17:15326945-15327101 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 510-652 |
| Cow position: | chr17:33284027-33283879 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 510-668 |
| Cow position: | chr17:15686071-15686232 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 117 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 77, 10 |
| Conread position: | 510-670 |
| Cow position: | chr17:4676001-4676168 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 511-670 |
| Cow position: | chr17:20080230-20080070 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 514-668 |
| Cow position: | chr17:2031898-2032057 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 515-665 |
| Cow position: | chr17:20232408-20232561 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 515-668 |
| Cow position: | chr17:14896621-14896778 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 516-665 |
| Cow position: | chr17:16120935-16120788 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 70, 31 |
| Conread position: | 522-665 |
| Cow position: | chr17:36283697-36283844 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 63, 0 |
Show alignments to all cow chromosomes.