Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10181H07.5 |
| Conread position: | 160-636 |
| Cow position: | chr18:19485661-19486148 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 314 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 7, 20 |
| Conread position: | 169-384 |
| Cow position: | chr18:51461522-51461302 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 169-668 |
| Cow position: | chr18:27988715-27989221 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 329 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 63, 18 |
| Conread position: | 169-670 |
| Cow position: | chr18:35373246-35372735 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 341 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 16, 239 |
| Conread position: | 169-670 |
| Cow position: | chr18:37490349-37490858 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 338 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 22, 106 |
| Conread position: | 170-384 |
| Cow position: | chr18:26245093-26244874 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 170-384 |
| Cow position: | chr18:27538392-27538611 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 170-414 |
| Cow position: | chr18:51695231-51695481 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 170-431 |
| Cow position: | chr18:36510146-36510413 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 17, 13 |
| Conread position: | 170-583 |
| Cow position: | chr18:51343212-51343629 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 50, 241 |
| Conread position: | 170-668 |
| Cow position: | chr18:5534540-5535042 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 322 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 59, 13 |
| Conread position: | 170-668 |
| Cow position: | chr18:14417498-14418004 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 323 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 59, 13 |
| Conread position: | 170-668 |
| Cow position: | chr18:19353896-19354402 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 249 |
| Conread position: | 170-668 |
| Cow position: | chr18:37507490-37507997 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 331 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 26, 92 |
| Conread position: | 174-672 |
| Cow position: | chr18:4947478-4947981 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 336 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 11, 125 |
| Conread position: | 183-378 |
| Cow position: | chr18:18852126-18852334 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 29, 84 |
| Conread position: | 183-668 |
| Cow position: | chr18:24617671-24618168 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 24 |
| Conread position: | 183-668 |
| Cow position: | chr18:29865077-29864576 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 331 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 29, 160 |
| Conread position: | 183-668 |
| Cow position: | chr18:41839272-41838755 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 342 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 52, 99 |
| Conread position: | 183-669 |
| Cow position: | chr18:15856747-15857221 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 318 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 33, 125 |
| Conread position: | 183-669 |
| Cow position: | chr18:51274547-51274049 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 272 |
| Conread position: | 183-670 |
| Cow position: | chr18:16392562-16392087 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 32 |
| Conread position: | 184-668 |
| Cow position: | chr18:16175083-16174586 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 156 |
| Conread position: | 185-362 |
| Cow position: | chr18:38342757-38342578 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 44, 76 |
| Conread position: | 185-399 |
| Cow position: | chr18:42516174-42516394 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 190-427 |
| Cow position: | chr18:12237733-12237969 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 34, 22 |
| Conread position: | 204-402 |
| Cow position: | chr18:35054699-35054891 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 69, 23 |
| Conread position: | 232-377 |
| Cow position: | chr18:29074529-29074674 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 106 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 238-668 |
| Cow position: | chr18:14131993-14132425 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 287 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 102, 75 |
| Conread position: | 238-668 |
| Cow position: | chr18:40482599-40483031 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 282 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 96, 91 |
| Conread position: | 246-668 |
| Cow position: | chr18:32166313-32165894 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 277 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 144, 162 |
| Conread position: | 246-672 |
| Cow position: | chr18:11273247-11272819 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 148 |
| Conread position: | 247-579 |
| Cow position: | chr18:48469569-48469239 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 137, 146 |
| Conread position: | 272-665 |
| Cow position: | chr18:52654452-52654842 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 248 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 118, 186 |
| Conread position: | 293-665 |
| Cow position: | chr18:23660844-23660467 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 245 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 101, 120 |
| Conread position: | 413-668 |
| Cow position: | chr18:44183485-44183217 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 428-670 |
| Cow position: | chr18:5078326-5078065 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 201 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 77, 162 |
| Conread position: | 508-657 |
| Cow position: | chr18:51695849-51696003 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 508-665 |
| Cow position: | chr18:9722495-9722656 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 508-665 |
| Cow position: | chr18:22183653-22183493 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 79, 93 |
| Conread position: | 508-665 |
| Cow position: | chr18:33270770-33270928 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 508-665 |
| Cow position: | chr18:37584036-37583875 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 508-665 |
| Cow position: | chr18:37701621-37701460 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 508-668 |
| Cow position: | chr18:6883296-6883130 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 508-668 |
| Cow position: | chr18:16464990-16464826 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 508-668 |
| Cow position: | chr18:23703216-23703052 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 508-668 |
| Cow position: | chr18:25922262-25922421 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 508-668 |
| Cow position: | chr18:36510488-36510652 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 508-668 |
| Cow position: | chr18:47743362-47743526 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 508-668 |
| Cow position: | chr18:51460974-51460809 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 508-668 |
| Cow position: | chr18:51482725-51482889 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 508-670 |
| Cow position: | chr18:1046147-1046310 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 508-670 |
| Cow position: | chr18:35290523-35290688 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 81, 14 |
| Conread position: | 512-652 |
| Cow position: | chr18:46875494-46875350 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 512-665 |
| Cow position: | chr18:16136806-16136649 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 512-668 |
| Cow position: | chr18:54106980-54107140 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 514-672 |
| Cow position: | chr18:40344519-40344356 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 73, 134 |
| Conread position: | 516-668 |
| Cow position: | chr18:44149518-44149362 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 69, 0 |
Show alignments to all cow chromosomes.