Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10181H07.5 |
| Conread position: | 160-668 |
| Cow position: | chr19:7343593-7344106 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 334 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 11, 24 |
| Conread position: | 166-402 |
| Cow position: | chr19:35107269-35107023 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 29, 18 |
| Conread position: | 169-668 |
| Cow position: | chr19:39667019-39666515 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 231 |
| Conread position: | 169-668 |
| Cow position: | chr19:52150159-52149642 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 252 |
| Conread position: | 170-367 |
| Cow position: | chr19:32210541-32210339 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 170-384 |
| Cow position: | chr19:20106260-20106479 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 170-665 |
| Cow position: | chr19:16319095-16318577 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 330 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 50, 241 |
| Conread position: | 170-668 |
| Cow position: | chr19:774138-774644 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 325 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 50, 225 |
| Conread position: | 170-668 |
| Cow position: | chr19:2272579-2272080 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 328 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 62, 25 |
| Conread position: | 170-668 |
| Cow position: | chr19:5899975-5899470 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 285 |
| Conread position: | 170-668 |
| Cow position: | chr19:33874949-33875451 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 13 |
| Conread position: | 170-668 |
| Cow position: | chr19:40850925-40850445 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 322 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 62, 17 |
| Conread position: | 173-414 |
| Cow position: | chr19:40471162-40470915 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 185 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 27, 69 |
| Conread position: | 183-378 |
| Cow position: | chr19:39835-40042 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 24, 192 |
| Conread position: | 183-668 |
| Cow position: | chr19:33943105-33943607 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 326 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 26, 239 |
| Conread position: | 183-668 |
| Cow position: | chr19:39184007-39183504 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 160 |
| Conread position: | 184-661 |
| Cow position: | chr19:35384078-35383594 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 353 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 55, 200 |
| Conread position: | 184-665 |
| Cow position: | chr19:30756756-30757266 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 339 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 26, 153 |
| Conread position: | 185-367 |
| Cow position: | chr19:23400687-23400505 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 54, 30 |
| Conread position: | 185-377 |
| Cow position: | chr19:27036088-27035899 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 50, 22 |
| Conread position: | 185-506 |
| Cow position: | chr19:28367485-28367798 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 218 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 46, 206 |
| Conread position: | 185-617 |
| Cow position: | chr19:28405172-28404749 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 13, 23 |
| Conread position: | 185-665 |
| Cow position: | chr19:48860219-48859726 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 215 |
| Conread position: | 188-664 |
| Cow position: | chr19:5730396-5730876 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 341 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 24, 55 |
| Conread position: | 188-665 |
| Cow position: | chr19:4387153-4387634 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 315 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 21, 41 |
| Conread position: | 188-668 |
| Cow position: | chr19:1660212-1660708 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 337 |
| Conread position: | 190-668 |
| Cow position: | chr19:2586755-2587259 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 129 |
| Conread position: | 230-504 |
| Cow position: | chr19:16128754-16129017 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 15, 110 |
| Conread position: | 231-665 |
| Cow position: | chr19:30559787-30560217 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 281 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 155, 163 |
| Conread position: | 232-432 |
| Cow position: | chr19:33596167-33595967 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 141, 134 |
| Conread position: | 234-430 |
| Cow position: | chr19:1587634-1587436 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 141, 60 |
| Conread position: | 234-663 |
| Cow position: | chr19:9706571-9706148 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 262, 79 |
| Conread position: | 241-403 |
| Cow position: | chr19:14159552-14159391 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 148, 27 |
| Conread position: | 266-668 |
| Cow position: | chr19:30453719-30453312 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 138, 10 |
| Conread position: | 279-509 |
| Cow position: | chr19:11900359-11900582 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 179 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 107, 129 |
| Conread position: | 307-670 |
| Cow position: | chr19:33596110-33595749 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 37, 28 |
| Conread position: | 324-668 |
| Cow position: | chr19:33904760-33905097 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 164, 64 |
| Conread position: | 508-668 |
| Cow position: | chr19:437467-437301 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 508-668 |
| Cow position: | chr19:15445988-15445824 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 508-668 |
| Cow position: | chr19:20106602-20106761 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 84, 97 |
| Conread position: | 508-668 |
| Cow position: | chr19:21338971-21338808 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 508-668 |
| Cow position: | chr19:22511899-22511735 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 508-668 |
| Cow position: | chr19:23400374-23400219 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 508-668 |
| Cow position: | chr19:28579790-28579635 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 508-668 |
| Cow position: | chr19:39392385-39392550 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 509-668 |
| Cow position: | chr19:891762-891599 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 516-668 |
| Cow position: | chr19:28796328-28796172 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 114 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 534-668 |
| Cow position: | chr19:16129268-16129407 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 55, 0 |
Show alignments to all cow chromosomes.