Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10181H07.5 |
| Conread position: | 160-509 |
| Cow position: | chr20:12436937-12436583 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 232 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 11, 176 |
| Conread position: | 160-668 |
| Cow position: | chr20:15293466-15293982 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 24 |
| Conread position: | 160-668 |
| Cow position: | chr20:21916121-21916636 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 333 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 7, 24 |
| Conread position: | 169-668 |
| Cow position: | chr20:19439410-19439915 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 326 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 51, 287 |
| Conread position: | 169-670 |
| Cow position: | chr20:871523-871000 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 345 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 16, 73 |
| Conread position: | 170-431 |
| Cow position: | chr20:28162320-28162587 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 10, 18 |
| Conread position: | 170-453 |
| Cow position: | chr20:30386584-30386294 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 50, 127 |
| Conread position: | 170-665 |
| Cow position: | chr20:26054195-26053693 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 241 |
| Conread position: | 170-665 |
| Cow position: | chr20:30429766-30430269 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 328 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 50, 244 |
| Conread position: | 170-668 |
| Cow position: | chr20:20441456-20440950 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 225 |
| Conread position: | 170-670 |
| Cow position: | chr20:9547143-9547649 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 144 |
| Conread position: | 173-668 |
| Cow position: | chr20:30687089-30687578 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 311 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 21, 67 |
| Conread position: | 179-402 |
| Cow position: | chr20:13793531-13793760 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 153 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 47, 15 |
| Conread position: | 183-384 |
| Cow position: | chr20:824266-824481 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 26, 166 |
| Conread position: | 183-385 |
| Cow position: | chr20:8972678-8972463 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 183-418 |
| Cow position: | chr20:21395419-21395660 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 52, 151 |
| Conread position: | 183-431 |
| Cow position: | chr20:5536443-5536706 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 26, 160 |
| Conread position: | 183-431 |
| Cow position: | chr20:29950028-29950287 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 18, 12 |
| Conread position: | 183-497 |
| Cow position: | chr20:7573067-7572747 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 232 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 29, 216 |
| Conread position: | 183-504 |
| Cow position: | chr20:31497919-31497589 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 218 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 11, 189 |
| Conread position: | 183-664 |
| Cow position: | chr20:13764394-13764893 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 160 |
| Conread position: | 183-665 |
| Cow position: | chr20:24615403-24614909 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 331 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 18, 183 |
| Conread position: | 183-668 |
| Cow position: | chr20:17660242-17659742 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 323 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 26, 5 |
| Conread position: | 183-668 |
| Cow position: | chr20:23800384-23800886 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 328 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 26, 10 |
| Conread position: | 184-414 |
| Cow position: | chr20:25849321-25849085 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 166 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 13, 151 |
| Conread position: | 184-668 |
| Cow position: | chr20:15066953-15067441 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 328 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 25, 10 |
| Conread position: | 184-668 |
| Cow position: | chr20:23468166-23467667 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 325 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 25, 157 |
| Conread position: | 184-668 |
| Cow position: | chr20:28564072-28563575 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 321 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 12, 42 |
| Conread position: | 185-378 |
| Cow position: | chr20:13769355-13769554 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 32, 86 |
| Conread position: | 188-400 |
| Cow position: | chr20:10853839-10853621 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 43, 106 |
| Conread position: | 190-668 |
| Cow position: | chr20:18323454-18322959 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 22 |
| Conread position: | 191-403 |
| Cow position: | chr20:13499618-13499841 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 173 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 204-433 |
| Cow position: | chr20:32349738-32349967 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 127, 58 |
| Conread position: | 206-665 |
| Cow position: | chr20:25899224-25899686 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 208 |
| Conread position: | 231-400 |
| Cow position: | chr20:19214540-19214710 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 232-399 |
| Cow position: | chr20:19341389-19341556 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 152, 86 |
| Conread position: | 266-668 |
| Cow position: | chr20:8366129-8365726 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 88, 193 |
| Conread position: | 277-670 |
| Cow position: | chr20:16178141-16177746 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 113, 146 |
| Conread position: | 432-670 |
| Cow position: | chr20:13678100-13677845 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 466-670 |
| Cow position: | chr20:16957920-16957712 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 116, 45 |
| Conread position: | 508-658 |
| Cow position: | chr20:8972334-8972180 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 508-665 |
| Cow position: | chr20:30577723-30577884 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 508-665 |
| Cow position: | chr20:32350083-32350240 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 23, 32 |
| Conread position: | 508-665 |
| Cow position: | chr20:33598277-33598438 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 508-668 |
| Cow position: | chr20:8351502-8351338 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 508-668 |
| Cow position: | chr20:12436563-12436397 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 508-668 |
| Cow position: | chr20:14327764-14327928 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 508-670 |
| Cow position: | chr20:13793854-13794021 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 510-668 |
| Cow position: | chr20:21396073-21396235 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 511-646 |
| Cow position: | chr20:13953024-13953162 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 106 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 511-668 |
| Cow position: | chr20:7513188-7513345 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 81, 35 |
| Conread position: | 516-668 |
| Cow position: | chr20:10867944-10867789 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 524-665 |
| Cow position: | chr20:6900263-6900118 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 524-665 |
| Cow position: | chr20:6906502-6906357 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 524-670 |
| Cow position: | chr20:7570384-7570234 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 63, 0 |
Show alignments to all cow chromosomes.