Cow genome map

Conread name: Ss1.1-Ova1-OVRM10181H07.5

Conread position: 157-668
Cow position: chr21:26836780-26837301 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 27

Conread position: 159-382
Cow position: chr21:31639513-31639737 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 148
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 67, 0

Conread position: 160-405
Cow position: chr21:47942545-47942794 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 169
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 7, 178

Conread position: 160-668
Cow position: chr21:5018736-5019255 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 24

Conread position: 160-668
Cow position: chr21:39426668-39427178 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 345
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 12, 39

Conread position: 161-668
Cow position: chr21:34000479-33999960 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 330
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 80, 47

Conread position: 169-385
Cow position: chr21:2673086-2672868 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 153
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 37, 71

Conread position: 169-656
Cow position: chr21:1286617-1286103 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 348
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 16, 26

Conread position: 169-668
Cow position: chr21:27069354-27068851 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 329
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 40, 18

Conread position: 170-327
Cow position: chr21:21520219-21520372 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 9, 0

Conread position: 170-403
Cow position: chr21:40270065-40269826 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 162
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 17, 13

Conread position: 170-414
Cow position: chr21:33710756-33711006 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 174
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 50, 0

Conread position: 170-414
Cow position: chr21:38802044-38802293 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 175
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 50, 241

Conread position: 170-583
Cow position: chr21:6414417-6414000 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 266
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 50, 249

Conread position: 170-652
Cow position: chr21:19612367-19612856 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 319
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 26, 18

Conread position: 170-665
Cow position: chr21:11507221-11507717 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 333
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 50, 243

Conread position: 170-668
Cow position: chr21:2512456-2512962 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 17

Conread position: 170-668
Cow position: chr21:26635550-26635044 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 332
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 50, 241

Conread position: 170-668
Cow position: chr21:30563281-30563776 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 331
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 51, 13

Conread position: 170-668
Cow position: chr21:30597861-30597355 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 328
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 59, 13

Conread position: 170-668
Cow position: chr21:31514707-31514204 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 13

Conread position: 171-429
Cow position: chr21:2539480-2539205 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 185
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 44, 0

Conread position: 171-668
Cow position: chr21:47646940-47647446 (view UCSC Genome Browser custom track)
Alignm length: 511
Alignm identity: 323
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 58, 16

Conread position: 173-665
Cow position: chr21:36979285-36978794 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 101

Conread position: 173-668
Cow position: chr21:21701529-21702018 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 329
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 81, 31

Conread position: 182-378
Cow position: chr21:36979933-36980131 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 137
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 30, 160

Conread position: 183-373
Cow position: chr21:29257477-29257293 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 140
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 15, 119

Conread position: 183-377
Cow position: chr21:24085191-24084983 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 151
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 26, 196

Conread position: 183-380
Cow position: chr21:28985710-28985917 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 155
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 56, 0

Conread position: 183-380
Cow position: chr21:39089983-39090185 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 141
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 25, 133

Conread position: 183-405
Cow position: chr21:9893584-9893816 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 170
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 26, 102

Conread position: 183-405
Cow position: chr21:29003926-29003680 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 183
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 29, 0

Conread position: 183-665
Cow position: chr21:2903209-2903671 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 301
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 23, 201

Conread position: 183-665
Cow position: chr21:33710760-33711243 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 326
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 26, 85

Conread position: 183-668
Cow position: chr21:147535-148033 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 157

Conread position: 183-668
Cow position: chr21:31250623-31251104 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 314
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 63, 11

Conread position: 183-668
Cow position: chr21:34655447-34655937 (view UCSC Genome Browser custom track)
Alignm length: 494
Alignm identity: 308
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 48, 331

Conread position: 183-668
Cow position: chr21:37372846-37373339 (view UCSC Genome Browser custom track)
Alignm length: 500
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 164

Conread position: 183-670
Cow position: chr21:38023735-38024217 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 343
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 19, 130

Conread position: 183-672
Cow position: chr21:10568314-10568808 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 321
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 26, 156

Conread position: 185-404
Cow position: chr21:4588389-4588168 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 153
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 39, 82

Conread position: 185-411
Cow position: chr21:26649085-26648858 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 168
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 27, 83

Conread position: 185-665
Cow position: chr21:997222-996731 (view UCSC Genome Browser custom track)
Alignm length: 497
Alignm identity: 313
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 41, 214

Conread position: 185-665
Cow position: chr21:4565079-4565564 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 28

Conread position: 185-668
Cow position: chr21:2880211-2879715 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 327
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 24, 8

Conread position: 186-668
Cow position: chr21:28257040-28257531 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 218

Conread position: 203-506
Cow position: chr21:21025099-21025389 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 211
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 31, 126

Conread position: 205-670
Cow position: chr21:7591309-7591770 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 303
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 185, 27

Conread position: 232-402
Cow position: chr21:25815886-25815715 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 122
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 152, 162

Conread position: 236-384
Cow position: chr21:27150158-27150306 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 236-429
Cow position: chr21:218686-218881 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 134
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 150, 85

Conread position: 237-643
Cow position: chr21:11157142-11156734 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 278
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 134, 105

Conread position: 238-504
Cow position: chr21:27567426-27567699 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 187
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 118, 72

Conread position: 421-661
Cow position: chr21:28986997-28987248 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 185
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 39, 76

Conread position: 433-668
Cow position: chr21:27285307-27285560 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 187
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 78, 0

Conread position: 434-668
Cow position: chr21:9865211-9864964 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 186
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 72, 184

Conread position: 434-670
Cow position: chr21:37149834-37150094 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 193
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 71, 135

Conread position: 435-668
Cow position: chr21:37124486-37124243 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 166
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 40, 0

Conread position: 503-668
Cow position: chr21:26401809-26401640 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 84, 0

Conread position: 508-649
Cow position: chr21:40683359-40683504 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 77, 0

Conread position: 508-658
Cow position: chr21:6967514-6967360 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 79, 0

Conread position: 508-665
Cow position: chr21:4096627-4096788 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 78, 0

Conread position: 508-665
Cow position: chr21:32897901-32897746 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 46, 0

Conread position: 508-665
Cow position: chr21:42915753-42915914 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 118
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 79, 0

Conread position: 508-665
Cow position: chr21:43564159-43563998 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 77, 0

Conread position: 508-668
Cow position: chr21:3780723-3780887 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 508-668
Cow position: chr21:29003571-29003412 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 129
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 80, 0

Conread position: 508-668
Cow position: chr21:33318447-33318278 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 79, 0

Conread position: 508-668
Cow position: chr21:41797641-41797805 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 123
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 79, 0

Conread position: 509-670
Cow position: chr21:15249478-15249315 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 12, 0

Conread position: 510-668
Cow position: chr21:44764003-44763841 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 120
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 82, 0

Conread position: 511-668
Cow position: chr21:4036201-4036362 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 76, 0

Conread position: 515-669
Cow position: chr21:4716917-4717071 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 82, 7

Conread position: 525-668
Cow position: chr21:27149593-27149446 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 60, 0

Conread position: 529-665
Cow position: chr21:29949761-29949902 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 108
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 7, 0

Show alignments to all cow chromosomes.