Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10181H07.5 |
| Conread position: | 152-668 |
| Cow position: | chr23:15526991-15527519 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 8 |
| Conread position: | 160-417 |
| Cow position: | chr23:15876144-15875885 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 11, 117 |
| Conread position: | 160-668 |
| Cow position: | chr23:3879665-3879149 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 340 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 170-378 |
| Cow position: | chr23:38691923-38692136 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 170-384 |
| Cow position: | chr23:14972524-14972305 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 170-384 |
| Cow position: | chr23:23172210-23172427 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 50, 98 |
| Conread position: | 170-396 |
| Cow position: | chr23:22145874-22145642 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 59, 164 |
| Conread position: | 170-414 |
| Cow position: | chr23:22168074-22168322 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 59, 9 |
| Conread position: | 170-414 |
| Cow position: | chr23:28304347-28304597 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 17, 13 |
| Conread position: | 170-607 |
| Cow position: | chr23:41141795-41141349 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 294 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 50, 241 |
| Conread position: | 170-665 |
| Cow position: | chr23:4818454-4818953 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 318 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 50, 164 |
| Conread position: | 170-665 |
| Cow position: | chr23:7314342-7314846 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 249 |
| Conread position: | 170-665 |
| Cow position: | chr23:32351330-32350827 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 241 |
| Conread position: | 170-668 |
| Cow position: | chr23:608147-608650 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 186 |
| Conread position: | 170-668 |
| Cow position: | chr23:4435084-4435591 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 282 |
| Conread position: | 170-668 |
| Cow position: | chr23:11714434-11713928 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 229 |
| Conread position: | 170-668 |
| Cow position: | chr23:14961515-14961017 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 332 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 15, 66 |
| Conread position: | 170-668 |
| Cow position: | chr23:16497812-16497317 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 332 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 59, 117 |
| Conread position: | 170-668 |
| Cow position: | chr23:20154794-20154284 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 326 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 59, 15 |
| Conread position: | 170-668 |
| Cow position: | chr23:36029946-36029451 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 332 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 60, 13 |
| Conread position: | 171-666 |
| Cow position: | chr23:31164235-31164737 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 324 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 58, 164 |
| Conread position: | 172-364 |
| Cow position: | chr23:4513918-4514114 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 37, 15 |
| Conread position: | 176-669 |
| Cow position: | chr23:618045-617541 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 352 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 55, 18 |
| Conread position: | 177-368 |
| Cow position: | chr23:17878322-17878126 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 178-668 |
| Cow position: | chr23:28218860-28219372 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 346 |
| Conread position: | 183-356 |
| Cow position: | chr23:6220587-6220769 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 29, 142 |
| Conread position: | 183-402 |
| Cow position: | chr23:31648591-31648362 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 50, 5 |
| Conread position: | 183-439 |
| Cow position: | chr23:16613748-16613483 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 26, 96 |
| Conread position: | 183-504 |
| Cow position: | chr23:26838257-26838578 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 190 |
| Conread position: | 183-665 |
| Cow position: | chr23:5873136-5872635 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 331 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 26, 194 |
| Conread position: | 183-668 |
| Cow position: | chr23:965059-964564 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 327 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 26, 160 |
| Conread position: | 183-668 |
| Cow position: | chr23:2793821-2793333 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 324 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 26, 9 |
| Conread position: | 183-668 |
| Cow position: | chr23:19490987-19491488 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 319 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 26, 160 |
| Conread position: | 183-670 |
| Cow position: | chr23:2759334-2759840 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 333 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 20, 160 |
| Conread position: | 185-384 |
| Cow position: | chr23:16055211-16055424 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 193-380 |
| Cow position: | chr23:2439832-2439642 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 42, 84 |
| Conread position: | 193-668 |
| Cow position: | chr23:30237733-30238207 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 198 |
| Conread position: | 204-411 |
| Cow position: | chr23:25677830-25677623 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 30, 73 |
| Conread position: | 204-668 |
| Cow position: | chr23:4639119-4638659 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 300 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 136, 30 |
| Conread position: | 231-378 |
| Cow position: | chr23:22369602-22369454 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 233-506 |
| Cow position: | chr23:23283024-23283282 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 8, 149 |
| Conread position: | 234-411 |
| Cow position: | chr23:8287441-8287620 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 111, 95 |
| Conread position: | 266-668 |
| Cow position: | chr23:1400672-1400275 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 264 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 124, 55 |
| Conread position: | 276-607 |
| Cow position: | chr23:11074935-11074609 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 225 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 111, 128 |
| Conread position: | 277-612 |
| Cow position: | chr23:26158897-26158569 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 238 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 219, 35 |
| Conread position: | 287-487 |
| Cow position: | chr23:38111106-38111302 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 159, 77 |
| Conread position: | 431-672 |
| Cow position: | chr23:2577305-2577565 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 77, 26 |
| Conread position: | 435-665 |
| Cow position: | chr23:29443391-29443154 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 508-658 |
| Cow position: | chr23:14972181-14972029 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 91, 57 |
| Conread position: | 508-665 |
| Cow position: | chr23:942735-942897 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 508-665 |
| Cow position: | chr23:7357011-7357172 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 508-665 |
| Cow position: | chr23:10874829-10874664 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 508-668 |
| Cow position: | chr23:2025307-2025143 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 508-668 |
| Cow position: | chr23:15178837-15179001 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 508-668 |
| Cow position: | chr23:17844657-17844816 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 508-668 |
| Cow position: | chr23:19279244-19279081 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 83, 26 |
| Conread position: | 508-668 |
| Cow position: | chr23:22145532-22145368 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 508-668 |
| Cow position: | chr23:28304689-28304853 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 508-668 |
| Cow position: | chr23:29450556-29450397 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 508-668 |
| Cow position: | chr23:37200746-37200582 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 509-657 |
| Cow position: | chr23:6221062-6221210 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 509-668 |
| Cow position: | chr23:1050759-1050594 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 512-670 |
| Cow position: | chr23:16055552-16055715 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 37, 16 |
| Conread position: | 534-670 |
| Cow position: | chr23:26838729-26838873 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 16, 0 |
Show alignments to all cow chromosomes.