Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10181H07.5 |
| Conread position: | 1-510 |
| Cow position: | chr24:17958192-17957687 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 50 |
| Conread position: | 159-373 |
| Cow position: | chr24:22972566-22972794 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 26, 7 |
| Conread position: | 159-664 |
| Cow position: | chr24:33934894-33935411 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 341 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 12, 42 |
| Conread position: | 160-665 |
| Cow position: | chr24:23504349-23503835 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 252 |
| Conread position: | 161-405 |
| Cow position: | chr24:36298933-36299169 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 226, 38 |
| Conread position: | 169-350 |
| Cow position: | chr24:6435994-6436190 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 169-431 |
| Cow position: | chr24:9545575-9545844 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 18, 14 |
| Conread position: | 169-494 |
| Cow position: | chr24:38639037-38639357 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 231 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 35, 113 |
| Conread position: | 169-665 |
| Cow position: | chr24:6337894-6338407 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 124 |
| Conread position: | 169-668 |
| Cow position: | chr24:9090541-9090034 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 333 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 16, 191 |
| Conread position: | 170-379 |
| Cow position: | chr24:6023566-6023352 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 170-384 |
| Cow position: | chr24:5991704-5991485 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 170-410 |
| Cow position: | chr24:310389-310635 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 170-414 |
| Cow position: | chr24:6036511-6036760 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 174 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 59, 17 |
| Conread position: | 170-414 |
| Cow position: | chr24:44019030-44019280 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 170-422 |
| Cow position: | chr24:17322214-17322466 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 50, 17 |
| Conread position: | 170-431 |
| Cow position: | chr24:14755520-14755787 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 62, 164 |
| Conread position: | 170-665 |
| Cow position: | chr24:6963229-6962726 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 229 |
| Conread position: | 170-665 |
| Cow position: | chr24:13044106-13043604 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 322 |
| Conread position: | 170-668 |
| Cow position: | chr24:147090-146582 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 318 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 59, 306 |
| Conread position: | 170-668 |
| Cow position: | chr24:7063064-7063565 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 108 |
| Conread position: | 170-668 |
| Cow position: | chr24:19834926-19835428 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 152 |
| Conread position: | 170-668 |
| Cow position: | chr24:29188812-29189316 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 333 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 40, 13 |
| Conread position: | 171-506 |
| Cow position: | chr24:12149772-12149449 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 232 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 38, 213 |
| Conread position: | 171-665 |
| Cow position: | chr24:13189702-13190189 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 328 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 34, 12 |
| Conread position: | 173-384 |
| Cow position: | chr24:6658969-6658754 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 36, 70 |
| Conread position: | 173-402 |
| Cow position: | chr24:40469842-40469611 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 31, 66 |
| Conread position: | 183-377 |
| Cow position: | chr24:38289240-38289044 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 33, 125 |
| Conread position: | 183-400 |
| Cow position: | chr24:6130337-6130566 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 183-401 |
| Cow position: | chr24:17409993-17410217 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 183-402 |
| Cow position: | chr24:42584234-42584011 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 27, 68 |
| Conread position: | 183-417 |
| Cow position: | chr24:35869044-35868811 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 49, 5 |
| Conread position: | 183-668 |
| Cow position: | chr24:14870804-14870298 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 105 |
| Conread position: | 183-668 |
| Cow position: | chr24:16560788-16560283 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 320 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 25, 50 |
| Conread position: | 183-670 |
| Cow position: | chr24:36558025-36557540 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 319 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 23, 81 |
| Conread position: | 184-384 |
| Cow position: | chr24:19469073-19468868 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 25, 114 |
| Conread position: | 185-668 |
| Cow position: | chr24:13233786-13234275 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 91 |
| Conread position: | 185-668 |
| Cow position: | chr24:19703023-19703525 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 333 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 27, 9 |
| Conread position: | 186-668 |
| Cow position: | chr24:6668219-6667743 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 305 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 54, 7 |
| Conread position: | 188-665 |
| Cow position: | chr24:32847547-32848039 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 327 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 24, 111 |
| Conread position: | 202-414 |
| Cow position: | chr24:6060967-6061182 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 33, 13 |
| Conread position: | 204-665 |
| Cow position: | chr24:41004049-41004519 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 295 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 130, 35 |
| Conread position: | 213-670 |
| Cow position: | chr24:40101348-40100895 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 301 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 81, 109 |
| Conread position: | 230-665 |
| Cow position: | chr24:6353724-6354158 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 294 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 110, 32 |
| Conread position: | 268-417 |
| Cow position: | chr24:35840270-35840115 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 277-668 |
| Cow position: | chr24:23094391-23094003 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 253 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 68, 52 |
| Conread position: | 279-656 |
| Cow position: | chr24:36480323-36479940 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 252 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 227, 105 |
| Conread position: | 283-504 |
| Cow position: | chr24:39678950-39679161 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 218, 103 |
| Conread position: | 469-669 |
| Cow position: | chr24:38475085-38475282 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 71, 51 |
| Conread position: | 508-665 |
| Cow position: | chr24:19468745-19468585 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 508-665 |
| Cow position: | chr24:40550486-40550647 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 508-668 |
| Cow position: | chr24:6022218-6022054 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 508-668 |
| Cow position: | chr24:12088063-12088228 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 508-668 |
| Cow position: | chr24:12149426-12149262 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 14, 25 |
| Conread position: | 508-668 |
| Cow position: | chr24:17322539-17322703 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 508-668 |
| Cow position: | chr24:23096900-23096742 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 508-668 |
| Cow position: | chr24:29085374-29085529 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 508-669 |
| Cow position: | chr24:17957668-17957504 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 77, 160 |
| Conread position: | 508-670 |
| Cow position: | chr24:36299274-36299435 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 16, 47 |
| Conread position: | 508-672 |
| Cow position: | chr24:16082637-16082469 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 79, 164 |
| Conread position: | 509-665 |
| Cow position: | chr24:209145-208983 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 76, 139 |
| Conread position: | 509-665 |
| Cow position: | chr24:38585271-38585111 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 510-665 |
| Cow position: | chr24:19184030-19184189 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 510-668 |
| Cow position: | chr24:5991298-5991137 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 75, 64 |
| Conread position: | 510-670 |
| Cow position: | chr24:11151261-11151099 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 77, 44 |
| Conread position: | 511-668 |
| Cow position: | chr24:6323401-6323239 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 518-670 |
| Cow position: | chr24:14174869-14174716 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 69, 14 |
| Conread position: | 529-665 |
| Cow position: | chr24:16182478-16182619 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 537-665 |
| Cow position: | chr24:17455245-17455113 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 541-668 |
| Cow position: | chr24:30816975-30817102 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.