Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10181H07.5 |
| Conread position: | 160-668 |
| Cow position: | chr27:167500-166989 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 28 |
| Conread position: | 160-668 |
| Cow position: | chr27:25803269-25802751 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 335 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 7, 174 |
| Conread position: | 161-670 |
| Cow position: | chr27:25034984-25034491 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 323 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 48, 8 |
| Conread position: | 169-431 |
| Cow position: | chr27:6160433-6160164 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 189 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 42, 227 |
| Conread position: | 169-670 |
| Cow position: | chr27:25084992-25085508 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 23 |
| Conread position: | 170-366 |
| Cow position: | chr27:19260135-19260336 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 170-406 |
| Cow position: | chr27:1900601-1900359 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 169 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 170-414 |
| Cow position: | chr27:29056597-29056847 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 170-431 |
| Cow position: | chr27:13898753-13899015 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 59, 13 |
| Conread position: | 170-658 |
| Cow position: | chr27:8199245-8199739 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 321 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 17, 9 |
| Conread position: | 170-665 |
| Cow position: | chr27:798130-797628 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 241 |
| Conread position: | 170-668 |
| Cow position: | chr27:1677135-1676632 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 17 |
| Conread position: | 170-668 |
| Cow position: | chr27:12748474-12748979 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 17 |
| Conread position: | 170-668 |
| Cow position: | chr27:16032966-16032462 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 286 |
| Conread position: | 170-668 |
| Cow position: | chr27:27664434-27664934 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 332 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 59, 13 |
| Conread position: | 173-668 |
| Cow position: | chr27:4980812-4981311 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 332 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 14, 49 |
| Conread position: | 179-668 |
| Cow position: | chr27:3234085-3233583 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 158 |
| Conread position: | 183-379 |
| Cow position: | chr27:28893061-28893259 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 53, 25 |
| Conread position: | 183-583 |
| Cow position: | chr27:19524995-19525400 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 258 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 26, 12 |
| Conread position: | 183-668 |
| Cow position: | chr27:1210797-1211299 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 328 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 26, 160 |
| Conread position: | 183-668 |
| Cow position: | chr27:9331175-9331684 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 160 |
| Conread position: | 183-670 |
| Cow position: | chr27:15274625-15274130 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 5 |
| Conread position: | 185-668 |
| Cow position: | chr27:9991769-9991273 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 331 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 27, 8 |
| Conread position: | 185-668 |
| Cow position: | chr27:26032419-26031930 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 321 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 50, 146 |
| Conread position: | 190-376 |
| Cow position: | chr27:25058360-25058555 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 206-670 |
| Cow position: | chr27:27194877-27194410 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 304 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 243, 19 |
| Conread position: | 232-403 |
| Cow position: | chr27:10327226-10327053 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 243-403 |
| Cow position: | chr27:15373352-15373514 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 277-668 |
| Cow position: | chr27:15035562-15035167 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 113, 231 |
| Conread position: | 300-507 |
| Cow position: | chr27:6015989-6016181 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 148 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 505-662 |
| Cow position: | chr27:16264294-16264132 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 82, 15 |
| Conread position: | 508-635 |
| Cow position: | chr27:23216280-23216149 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 508-652 |
| Cow position: | chr27:15373623-15373772 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 508-663 |
| Cow position: | chr27:10377518-10377678 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 508-665 |
| Cow position: | chr27:160760-160920 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 77, 58 |
| Conread position: | 508-665 |
| Cow position: | chr27:22743616-22743455 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 508-668 |
| Cow position: | chr27:11487045-11487197 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 508-668 |
| Cow position: | chr27:23319182-23319018 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 508-668 |
| Cow position: | chr27:27288274-27288437 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 508-669 |
| Cow position: | chr27:28893384-28893539 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 508-670 |
| Cow position: | chr27:8590854-8591020 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 512-668 |
| Cow position: | chr27:23293322-23293482 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 75, 0 |
Show alignments to all cow chromosomes.