Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10181H07.5 |
| Conread position: | 160-380 |
| Cow position: | chr28:17389872-17390097 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 7, 24 |
| Conread position: | 160-664 |
| Cow position: | chr28:10615531-10615026 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 327 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 7, 101 |
| Conread position: | 160-668 |
| Cow position: | chr28:10580403-10579888 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 332 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 27, 19 |
| Conread position: | 169-668 |
| Cow position: | chr28:2085935-2086448 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 175 |
| Conread position: | 169-668 |
| Cow position: | chr28:12151810-12152307 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 336 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 16, 73 |
| Conread position: | 170-352 |
| Cow position: | chr28:22041804-22041617 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 170-402 |
| Cow position: | chr28:10645953-10645719 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 61, 13 |
| Conread position: | 170-403 |
| Cow position: | chr28:7741916-7742153 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 161 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 63, 46 |
| Conread position: | 170-432 |
| Cow position: | chr28:698760-699024 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 11, 24 |
| Conread position: | 170-615 |
| Cow position: | chr28:17381389-17380938 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 291 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 59, 30 |
| Conread position: | 170-622 |
| Cow position: | chr28:9288431-9288887 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 297 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 50, 238 |
| Conread position: | 170-665 |
| Cow position: | chr28:484112-483610 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 27 |
| Conread position: | 170-665 |
| Cow position: | chr28:1459576-1460079 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 249 |
| Conread position: | 170-665 |
| Cow position: | chr28:6537329-6536821 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 441 |
| Conread position: | 170-668 |
| Cow position: | chr28:3190771-3190265 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 13 |
| Conread position: | 170-668 |
| Cow position: | chr28:5750222-5749715 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 331 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 59, 152 |
| Conread position: | 170-668 |
| Cow position: | chr28:7003479-7003983 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 9 |
| Conread position: | 170-668 |
| Cow position: | chr28:8380518-8381023 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 328 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 17, 13 |
| Conread position: | 170-668 |
| Cow position: | chr28:24590338-24590842 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 207 |
| Conread position: | 170-668 |
| Cow position: | chr28:26424777-26424274 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 321 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 56, 15 |
| Conread position: | 170-672 |
| Cow position: | chr28:33638023-33638530 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 13 |
| Conread position: | 171-668 |
| Cow position: | chr28:6778459-6777954 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 251 |
| Conread position: | 173-649 |
| Cow position: | chr28:7059180-7058700 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 242 |
| Conread position: | 173-668 |
| Cow position: | chr28:31850466-31849948 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 31 |
| Conread position: | 174-402 |
| Cow position: | chr28:7707204-7706973 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 59, 11 |
| Conread position: | 177-670 |
| Cow position: | chr28:11504752-11504252 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 195 |
| Conread position: | 179-403 |
| Cow position: | chr28:33253795-33254034 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 164 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 30, 164 |
| Conread position: | 179-670 |
| Cow position: | chr28:32304757-32304263 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 334 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 10, 205 |
| Conread position: | 181-668 |
| Cow position: | chr28:1166408-1165911 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 330 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 28, 160 |
| Conread position: | 182-377 |
| Cow position: | chr28:15587560-15587761 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 53, 98 |
| Conread position: | 183-349 |
| Cow position: | chr28:9180102-9180274 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 26, 162 |
| Conread position: | 183-378 |
| Cow position: | chr28:18100010-18099805 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 18, 81 |
| Conread position: | 183-380 |
| Cow position: | chr28:24559090-24559296 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 29, 123 |
| Conread position: | 183-411 |
| Cow position: | chr28:11489390-11489153 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 28, 17 |
| Conread position: | 183-433 |
| Cow position: | chr28:29821484-29821736 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 18, 91 |
| Conread position: | 183-438 |
| Cow position: | chr28:5803507-5803773 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 201 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 23, 162 |
| Conread position: | 183-668 |
| Cow position: | chr28:784147-784649 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 325 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 49, 25 |
| Conread position: | 183-668 |
| Cow position: | chr28:1506351-1506847 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 324 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 26, 328 |
| Conread position: | 183-668 |
| Cow position: | chr28:1954845-1955344 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 24 |
| Conread position: | 183-668 |
| Cow position: | chr28:12408740-12408236 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 152 |
| Conread position: | 183-668 |
| Cow position: | chr28:13461456-13461948 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 333 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 26, 160 |
| Conread position: | 183-668 |
| Cow position: | chr28:14703898-14703397 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 324 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 26, 284 |
| Conread position: | 183-668 |
| Cow position: | chr28:15034626-15034124 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 330 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 26, 230 |
| Conread position: | 184-659 |
| Cow position: | chr28:10496004-10495524 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 324 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 16, 26 |
| Conread position: | 185-668 |
| Cow position: | chr28:1813445-1812953 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 332 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 24, 8 |
| Conread position: | 188-429 |
| Cow position: | chr28:1765474-1765725 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 49, 157 |
| Conread position: | 189-385 |
| Cow position: | chr28:7827481-7827682 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 148 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 46, 19 |
| Conread position: | 191-479 |
| Cow position: | chr28:8784807-8785088 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 216 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 43, 115 |
| Conread position: | 191-670 |
| Cow position: | chr28:21360994-21361483 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 320 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 34, 155 |
| Conread position: | 192-360 |
| Cow position: | chr28:6786753-6786925 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 43, 147 |
| Conread position: | 204-378 |
| Cow position: | chr28:23023742-23023920 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 204-396 |
| Cow position: | chr28:13604272-13604469 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 35, 121 |
| Conread position: | 205-663 |
| Cow position: | chr28:22231774-22231310 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 304 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 26, 94 |
| Conread position: | 208-668 |
| Cow position: | chr28:8719429-8718978 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 308 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 45, 24 |
| Conread position: | 229-401 |
| Cow position: | chr28:9295809-9295640 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 46, 18 |
| Conread position: | 231-470 |
| Cow position: | chr28:21566992-21567222 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 232-668 |
| Cow position: | chr28:24669146-24669582 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 290 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 155, 70 |
| Conread position: | 234-384 |
| Cow position: | chr28:10650978-10650828 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 236-668 |
| Cow position: | chr28:31591111-31591544 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 281 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 150, 171 |
| Conread position: | 271-665 |
| Cow position: | chr28:24884441-24884829 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 271 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 124, 180 |
| Conread position: | 351-668 |
| Cow position: | chr28:8785089-8785421 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 55 |
| Conread position: | 413-663 |
| Cow position: | chr28:759491-759238 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 9, 83 |
| Conread position: | 413-670 |
| Cow position: | chr28:28440451-28440724 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 434-668 |
| Cow position: | chr28:7742161-7742413 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 434-670 |
| Cow position: | chr28:11953709-11953951 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 64, 88 |
| Conread position: | 508-658 |
| Cow position: | chr28:13604781-13604935 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 508-665 |
| Cow position: | chr28:17630922-17631083 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 508-665 |
| Cow position: | chr28:21378348-21378510 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 508-665 |
| Cow position: | chr28:30805583-30805744 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 508-668 |
| Cow position: | chr28:308019-307855 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 508-668 |
| Cow position: | chr28:17665504-17665341 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 508-668 |
| Cow position: | chr28:23311485-23311329 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 508-670 |
| Cow position: | chr28:2121276-2121442 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 79, 59 |
| Conread position: | 509-662 |
| Cow position: | chr28:17390227-17390384 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 509-665 |
| Cow position: | chr28:15998927-15999087 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 509-668 |
| Cow position: | chr28:5209935-5210098 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 510-668 |
| Cow position: | chr28:1216014-1215854 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 510-668 |
| Cow position: | chr28:22259332-22259167 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 512-665 |
| Cow position: | chr28:10293286-10293447 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 24, 10 |
| Conread position: | 512-669 |
| Cow position: | chr28:21567724-21567881 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 76, 14 |
| Conread position: | 515-668 |
| Cow position: | chr28:9295256-9295101 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 72, 22 |
| Conread position: | 515-670 |
| Cow position: | chr28:5766570-5766727 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 34, 30 |
Show alignments to all cow chromosomes.