Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10181H07.5 |
| Conread position: | 140-433 |
| Cow position: | chr29:3176035-3175743 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 14, 60 |
| Conread position: | 157-420 |
| Cow position: | chr29:14587350-14587620 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 14, 27 |
| Conread position: | 159-431 |
| Cow position: | chr29:5959011-5959287 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 12, 21 |
| Conread position: | 160-399 |
| Cow position: | chr29:45461181-45461426 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 7, 24 |
| Conread position: | 160-404 |
| Cow position: | chr29:32892212-32892463 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 11, 108 |
| Conread position: | 160-668 |
| Cow position: | chr29:7845824-7846341 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 297 |
| Conread position: | 160-668 |
| Cow position: | chr29:32558317-32557801 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 262 |
| Conread position: | 165-665 |
| Cow position: | chr29:9641346-9640832 (view UCSC Genome Browser custom track) |
| Alignm length: | 524 |
| Alignm identity: | 334 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 70, 22 |
| Conread position: | 169-430 |
| Cow position: | chr29:24335566-24335291 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 33, 48 |
| Conread position: | 169-668 |
| Cow position: | chr29:16345647-16346152 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 342 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 16, 99 |
| Conread position: | 170-352 |
| Cow position: | chr29:29502814-29502627 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 170-378 |
| Cow position: | chr29:27979475-27979263 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 50, 138 |
| Conread position: | 170-431 |
| Cow position: | chr29:40501558-40501295 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 59, 13 |
| Conread position: | 170-610 |
| Cow position: | chr29:27180308-27179860 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 284 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 50, 249 |
| Conread position: | 170-656 |
| Cow position: | chr29:5236466-5236965 (view UCSC Genome Browser custom track) |
| Alignm length: | 503 |
| Alignm identity: | 320 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 17, 13 |
| Conread position: | 170-665 |
| Cow position: | chr29:2101284-2101787 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 325 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 59, 164 |
| Conread position: | 170-665 |
| Cow position: | chr29:10022887-10022384 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 249 |
| Conread position: | 170-665 |
| Cow position: | chr29:21431407-21430907 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 249 |
| Conread position: | 170-665 |
| Cow position: | chr29:34798366-34797861 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 328 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 17, 13 |
| Conread position: | 170-665 |
| Cow position: | chr29:38207219-38206715 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 241 |
| Conread position: | 170-668 |
| Cow position: | chr29:7429679-7429169 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 331 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 62, 13 |
| Conread position: | 170-668 |
| Cow position: | chr29:13622413-13621907 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 241 |
| Conread position: | 170-668 |
| Cow position: | chr29:19526841-19526335 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 229 |
| Conread position: | 170-668 |
| Cow position: | chr29:19621832-19621316 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 347 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 48, 13 |
| Conread position: | 170-668 |
| Cow position: | chr29:19655069-19655569 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 331 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 59, 13 |
| Conread position: | 170-668 |
| Cow position: | chr29:26163389-26162885 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 325 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 17, 165 |
| Conread position: | 170-668 |
| Cow position: | chr29:35298355-35298861 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 229 |
| Conread position: | 170-668 |
| Cow position: | chr29:39078266-39077761 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 328 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 26, 13 |
| Conread position: | 171-665 |
| Cow position: | chr29:15946380-15945873 (view UCSC Genome Browser custom track) |
| Alignm length: | 517 |
| Alignm identity: | 337 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 58, 12 |
| Conread position: | 171-668 |
| Cow position: | chr29:14210105-14209600 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 318 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 58, 16 |
| Conread position: | 171-668 |
| Cow position: | chr29:20252604-20253119 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 334 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 26, 170 |
| Conread position: | 172-668 |
| Cow position: | chr29:25931083-25930568 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 345 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 37, 171 |
| Conread position: | 173-382 |
| Cow position: | chr29:14112988-14113204 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 22, 127 |
| Conread position: | 174-668 |
| Cow position: | chr29:13018147-13018641 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 329 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 55, 93 |
| Conread position: | 176-332 |
| Cow position: | chr29:12793696-12793850 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 113 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 180-668 |
| Cow position: | chr29:32541548-32542045 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 322 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 28, 155 |
| Conread position: | 183-414 |
| Cow position: | chr29:23977572-23977818 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 26, 160 |
| Conread position: | 183-509 |
| Cow position: | chr29:4517013-4517367 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 29, 111 |
| Conread position: | 183-662 |
| Cow position: | chr29:409799-409316 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 314 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 26, 95 |
| Conread position: | 183-665 |
| Cow position: | chr29:2839893-2839393 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 325 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 26, 147 |
| Conread position: | 183-665 |
| Cow position: | chr29:31182857-31183350 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 241 |
| Conread position: | 183-668 |
| Cow position: | chr29:47006-46511 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 320 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 52, 42 |
| Conread position: | 183-668 |
| Cow position: | chr29:2691612-2692113 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 328 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 26, 159 |
| Conread position: | 183-668 |
| Cow position: | chr29:6264551-6264052 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 160 |
| Conread position: | 183-668 |
| Cow position: | chr29:43324968-43325465 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 325 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 26, 157 |
| Conread position: | 184-668 |
| Cow position: | chr29:13583531-13584032 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 334 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 25, 247 |
| Conread position: | 185-402 |
| Cow position: | chr29:4633175-4632952 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 170 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 51, 14 |
| Conread position: | 204-384 |
| Cow position: | chr29:36634896-36634719 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 204-402 |
| Cow position: | chr29:19954109-19954303 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 178, 15 |
| Conread position: | 208-659 |
| Cow position: | chr29:13851381-13850941 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 292 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 265, 26 |
| Conread position: | 231-384 |
| Cow position: | chr29:14084619-14084466 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 110, 103 |
| Conread position: | 231-663 |
| Cow position: | chr29:2948869-2948428 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 288 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 111, 99 |
| Conread position: | 234-669 |
| Cow position: | chr29:2746948-2746498 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 309 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 148, 132 |
| Conread position: | 236-432 |
| Cow position: | chr29:2465360-2465163 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 98, 81 |
| Conread position: | 236-668 |
| Cow position: | chr29:609132-608697 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 170 |
| Conread position: | 236-668 |
| Cow position: | chr29:19889102-19889531 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 278 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 157, 184 |
| Conread position: | 237-504 |
| Cow position: | chr29:14098263-14098519 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 176 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 117, 18 |
| Conread position: | 238-509 |
| Cow position: | chr29:8625690-8625428 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 139, 91 |
| Conread position: | 251-662 |
| Cow position: | chr29:37044706-37044315 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 259 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 341, 15 |
| Conread position: | 263-506 |
| Cow position: | chr29:17151790-17152015 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 185 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 267-668 |
| Cow position: | chr29:10645863-10645459 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 73, 62 |
| Conread position: | 285-670 |
| Cow position: | chr29:21422129-21421747 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 105, 7 |
| Conread position: | 433-668 |
| Cow position: | chr29:16688526-16688781 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 59, 186 |
| Conread position: | 508-659 |
| Cow position: | chr29:4517387-4517541 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 78, 150 |
| Conread position: | 508-663 |
| Cow position: | chr29:34526402-34526562 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 94, 12 |
| Conread position: | 508-665 |
| Cow position: | chr29:13922287-13922448 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 508-665 |
| Cow position: | chr29:27978043-27977880 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 508-665 |
| Cow position: | chr29:31122615-31122779 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 508-668 |
| Cow position: | chr29:2465089-2464926 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 79, 55 |
| Conread position: | 508-668 |
| Cow position: | chr29:5980927-5980762 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 122 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 51, 96 |
| Conread position: | 508-668 |
| Cow position: | chr29:8625408-8625241 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 508-668 |
| Cow position: | chr29:9082098-9081935 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 75, 14 |
| Conread position: | 508-668 |
| Cow position: | chr29:12794265-12794428 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 138 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 508-668 |
| Cow position: | chr29:16014517-16014350 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 508-668 |
| Cow position: | chr29:17406911-17407076 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 508-668 |
| Cow position: | chr29:35275408-35275245 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 79, 156 |
| Conread position: | 508-668 |
| Cow position: | chr29:40501223-40501063 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 508-670 |
| Cow position: | chr29:29617522-29617355 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 120 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 509-668 |
| Cow position: | chr29:38228765-38228926 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 78, 37 |
| Conread position: | 510-665 |
| Cow position: | chr29:25936392-25936547 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 112 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 510-668 |
| Cow position: | chr29:42805201-42805359 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 12, 95 |
| Conread position: | 511-670 |
| Cow position: | chr29:21536064-21536226 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 76, 90 |
| Conread position: | 515-668 |
| Cow position: | chr29:15996591-15996434 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 515-670 |
| Cow position: | chr29:14082931-14082775 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 11, 0 |
Show alignments to all cow chromosomes.