Cow genome map

Conread name: Ss1.1-Pig1-122O09.5

Conread position: 1-347
Cow position: chr10:54126949-54127275 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 0

Conread position: 1-441
Cow position: chr10:25497850-25498261 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 95

Conread position: 2-441
Cow position: chr10:29695732-29696151 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 306
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 76, 130

Conread position: 2-441
Cow position: chr10:62216103-62216516 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 0

Conread position: 11-441
Cow position: chr10:8289465-8289893 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 73

Conread position: 15-276
Cow position: chr10:37040590-37040832 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 184
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 69, 0

Conread position: 15-401
Cow position: chr10:46190877-46191244 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 262
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 149, 80

Conread position: 15-402
Cow position: chr10:61296797-61297201 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 232

Conread position: 15-429
Cow position: chr10:38345873-38345465 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 397, 64

Conread position: 15-435
Cow position: chr10:281153-280716 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 401

Conread position: 15-441
Cow position: chr10:7283179-7282773 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 15-441
Cow position: chr10:10581156-10581583 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 104

Conread position: 15-441
Cow position: chr10:19511114-19511515 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 15-441
Cow position: chr10:21486419-21486826 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 0

Conread position: 15-441
Cow position: chr10:24299353-24298942 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 283
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 179, 80

Conread position: 15-441
Cow position: chr10:29847117-29846700 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 58

Conread position: 15-441
Cow position: chr10:32650241-32650642 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 0

Conread position: 15-441
Cow position: chr10:37060430-37060839 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 15-441
Cow position: chr10:37769326-37769732 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 15-441
Cow position: chr10:38538990-38538588 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 15-441
Cow position: chr10:57990462-57990054 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 15-441
Cow position: chr10:60489158-60489572 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 83

Conread position: 18-303
Cow position: chr10:19497443-19497140 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 202
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 70, 0

Conread position: 18-401
Cow position: chr10:4192743-4192342 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 0

Conread position: 18-401
Cow position: chr10:4499215-4499578 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 253
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 80, 0

Conread position: 18-441
Cow position: chr10:14803308-14803744 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 292

Conread position: 18-441
Cow position: chr10:19839645-19840062 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 276
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 104, 66

Conread position: 18-441
Cow position: chr10:21741279-21740842 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 218

Conread position: 18-441
Cow position: chr10:39179263-39179693 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 294
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 70, 289

Conread position: 18-441
Cow position: chr10:39817873-39817440 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 156

Conread position: 18-441
Cow position: chr10:41876393-41876828 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 227

Conread position: 18-441
Cow position: chr10:47906252-47906687 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 250

Conread position: 19-388
Cow position: chr10:21466726-21467112 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 260
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 68, 0

Conread position: 19-433
Cow position: chr10:19143835-19143436 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 412, 65

Conread position: 19-441
Cow position: chr10:22100747-22101151 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 0

Conread position: 19-441
Cow position: chr10:32577772-32578213 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 0

Conread position: 19-441
Cow position: chr10:41156927-41157357 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 317

Conread position: 19-441
Cow position: chr10:51953131-51952696 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 162

Conread position: 19-441
Cow position: chr10:62409347-62408942 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 0

Conread position: 20-441
Cow position: chr10:21401193-21400762 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 152

Conread position: 22-441
Cow position: chr10:11686181-11685758 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 287
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 71, 306

Conread position: 22-446
Cow position: chr10:39041798-39041390 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 0

Conread position: 38-400
Cow position: chr10:38546698-38546354 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 0

Conread position: 84-441
Cow position: chr10:41566665-41567016 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 245
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 236, 73

Conread position: 88-441
Cow position: chr10:55092671-55093020 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 240
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 100, 71

Conread position: 93-305
Cow position: chr10:42736072-42736281 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 153
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 9, 81

Conread position: 98-317
Cow position: chr10:28641056-28641276 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 147
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 74, 0

Conread position: 98-441
Cow position: chr10:57559980-57559639 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 300, 221

Conread position: 104-389
Cow position: chr10:19715471-19715188 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 0

Conread position: 107-441
Cow position: chr10:123894-124219 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 214

Conread position: 107-441
Cow position: chr10:1375113-1375446 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 0

Conread position: 107-456
Cow position: chr10:42109310-42109657 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 219
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 276, 109

Conread position: 107-456
Cow position: chr10:42747679-42748026 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 219
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 275, 177

Conread position: 110-441
Cow position: chr10:14859567-14859887 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 218
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 29, 0

Conread position: 122-401
Cow position: chr10:34318662-34318393 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 187
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 36, 0

Conread position: 122-402
Cow position: chr10:28116843-28116553 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 196
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 40, 32

Conread position: 128-341
Cow position: chr10:183141-183353 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 145
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 103, 95

Conread position: 129-400
Cow position: chr10:38846978-38847242 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 185
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 161, 28

Conread position: 139-400
Cow position: chr10:58377952-58377703 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 174
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 82, 0

Conread position: 141-441
Cow position: chr10:54059736-54059445 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 209
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 67, 35

Conread position: 142-313
Cow position: chr10:2123500-2123329 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 130
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 144-441
Cow position: chr10:29633245-29632951 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 211
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 9, 15

Conread position: 151-435
Cow position: chr10:32063770-32064056 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 195
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 22, 11

Conread position: 162-399
Cow position: chr10:31523488-31523707 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 174
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 10, 0

Conread position: 165-411
Cow position: chr10:15862656-15862417 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 168
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 166, 50

Conread position: 168-434
Cow position: chr10:62777978-62778248 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 168-441
Cow position: chr10:34685532-34685805 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 143

Conread position: 170-441
Cow position: chr10:25565600-25565336 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 185
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 120, 0

Conread position: 176-332
Cow position: chr10:1938196-1938037 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 139, 0

Conread position: 176-441
Cow position: chr10:276238-276503 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 141

Conread position: 181-400
Cow position: chr10:58596156-58596373 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 158
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 13, 62

Conread position: 188-436
Cow position: chr10:10478473-10478239 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 173
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 85, 0

Conread position: 189-441
Cow position: chr10:25359060-25359309 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 186
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 60, 0

Conread position: 189-441
Cow position: chr10:49310198-49310446 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 179
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 76, 36

Conread position: 203-447
Cow position: chr10:42628347-42628576 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 175
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 64, 0

Conread position: 267-434
Cow position: chr10:50018322-50018156 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 129
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 40, 120

Show alignments to all cow chromosomes.