Cow genome map

Conread name: Ss1.1-Pig1-122O09.5

Conread position: 1-396
Cow position: chr14:46463862-46464236 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 266
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 113, 94

Conread position: 1-441
Cow position: chr14:35388071-35387640 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 20

Conread position: 2-431
Cow position: chr14:44551114-44551535 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 0

Conread position: 2-441
Cow position: chr14:40338762-40339197 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 41

Conread position: 9-433
Cow position: chr14:38533231-38532812 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 298, 8

Conread position: 10-433
Cow position: chr14:45833239-45833644 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 56

Conread position: 11-434
Cow position: chr14:44376501-44376920 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 86

Conread position: 15-390
Cow position: chr14:50133984-50134349 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 83

Conread position: 15-432
Cow position: chr14:41754953-41755358 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 32

Conread position: 15-435
Cow position: chr14:46083708-46084109 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 0

Conread position: 15-441
Cow position: chr14:11155073-11154663 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 15-441
Cow position: chr14:13272334-13272748 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 32

Conread position: 15-441
Cow position: chr14:13302108-13302520 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 90

Conread position: 15-441
Cow position: chr14:17684483-17684885 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 15-441
Cow position: chr14:20781539-20781946 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 15-441
Cow position: chr14:22032598-22032192 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 15-441
Cow position: chr14:44685109-44685538 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 92

Conread position: 17-441
Cow position: chr14:16274215-16273806 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 67

Conread position: 18-387
Cow position: chr14:2283043-2283424 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 154

Conread position: 18-394
Cow position: chr14:30597323-30596926 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 279
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 80, 168

Conread position: 18-426
Cow position: chr14:30585886-30585461 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 0

Conread position: 18-426
Cow position: chr14:45916465-45916876 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 79

Conread position: 18-441
Cow position: chr14:5528150-5528551 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 0

Conread position: 18-441
Cow position: chr14:17001965-17001565 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 57

Conread position: 18-441
Cow position: chr14:19329183-19328779 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 0

Conread position: 19-204
Cow position: chr14:45304550-45304374 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 133
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 76, 0

Conread position: 19-325
Cow position: chr14:10561683-10562006 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 214
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 69, 0

Conread position: 19-326
Cow position: chr14:33394752-33394428 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 219
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 74, 0

Conread position: 19-441
Cow position: chr14:749628-750059 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 289
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 69, 156

Conread position: 19-441
Cow position: chr14:17492400-17491967 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 170

Conread position: 19-441
Cow position: chr14:45672992-45672555 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 288

Conread position: 19-441
Cow position: chr14:48255228-48254821 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 65

Conread position: 22-441
Cow position: chr14:7471463-7471866 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 0

Conread position: 22-441
Cow position: chr14:28994771-28994365 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 51

Conread position: 36-441
Cow position: chr14:45205134-45205560 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 294
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 60, 10

Conread position: 38-402
Cow position: chr14:22018488-22018857 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 252
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 94, 45

Conread position: 38-433
Cow position: chr14:45159955-45160347 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 59

Conread position: 38-441
Cow position: chr14:44225514-44225899 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 40-427
Cow position: chr14:44780809-44780441 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 252
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 55, 0

Conread position: 40-427
Cow position: chr14:44783149-44782781 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 252
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 55, 0

Conread position: 91-436
Cow position: chr14:44130056-44130405 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 246
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 34, 177

Conread position: 96-446
Cow position: chr14:35928326-35928673 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 239
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 125, 7

Conread position: 98-369
Cow position: chr14:17241388-17241653 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 180
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 197, 0

Conread position: 104-447
Cow position: chr14:50109733-50110077 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 129

Conread position: 107-441
Cow position: chr14:37223058-37223392 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 293

Conread position: 126-389
Cow position: chr14:44580122-44580380 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 185
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 6, 51

Conread position: 128-402
Cow position: chr14:14309880-14309613 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 191
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 77, 23

Conread position: 128-441
Cow position: chr14:31607742-31607430 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 206
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 185, 59

Conread position: 131-441
Cow position: chr14:7831359-7831048 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 217
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 22, 125

Conread position: 135-396
Cow position: chr14:16920502-16920237 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 185
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 23, 0

Conread position: 135-441
Cow position: chr14:47623756-47624059 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 37

Conread position: 139-432
Cow position: chr14:40170491-40170186 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 208
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 182, 203

Conread position: 142-441
Cow position: chr14:45079732-45080024 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 209
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 201, 22

Conread position: 144-441
Cow position: chr14:11467792-11468089 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 204
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 19, 80

Conread position: 148-419
Cow position: chr14:14422807-14422543 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 186
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 11, 0

Conread position: 150-441
Cow position: chr14:23256556-23256849 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 202
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 140, 258

Conread position: 151-400
Cow position: chr14:44261890-44261639 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 173
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 112, 100

Conread position: 170-440
Cow position: chr14:9044784-9045054 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 191
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 46, 36

Conread position: 175-441
Cow position: chr14:29048670-29048411 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 190
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 135, 88

Conread position: 176-435
Cow position: chr14:34774827-34775078 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 171
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 33, 0

Conread position: 176-435
Cow position: chr14:41085582-41085328 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 0

Conread position: 176-441
Cow position: chr14:45712752-45712485 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 5

Conread position: 176-441
Cow position: chr14:45850453-45850715 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 5

Conread position: 181-390
Cow position: chr14:1499983-1500193 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 157
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 186, 0

Conread position: 181-435
Cow position: chr14:23529762-23529526 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 174
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 46, 0

Conread position: 188-441
Cow position: chr14:23690989-23690734 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 0

Conread position: 189-441
Cow position: chr14:45767247-45767496 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 180
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 131, 22

Conread position: 191-433
Cow position: chr14:36967498-36967741 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 176
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 115, 0

Conread position: 191-441
Cow position: chr14:13660752-13660497 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 178
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 24, 0

Conread position: 191-441
Cow position: chr14:44856185-44855935 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 191
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 202-432
Cow position: chr14:13326858-13326630 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 156
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 186, 0

Conread position: 206-441
Cow position: chr14:13778119-13778354 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 169
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 207-395
Cow position: chr14:15277602-15277407 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 148
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 9, 0

Conread position: 255-441
Cow position: chr14:44421862-44422047 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 138
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 123, 0

Show alignments to all cow chromosomes.