Cow genome map
| Conread name: | Ss1.1-Pig1-122O09.5 |
| Conread position: | 1-402 |
| Cow position: | chr16:36232881-36232498 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 269 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 40, 34 |
| Conread position: | 1-441 |
| Cow position: | chr16:29031636-29032061 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 17 |
| Conread position: | 1-441 |
| Cow position: | chr16:49236398-49235970 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 17 |
| Conread position: | 2-436 |
| Cow position: | chr16:20255576-20255171 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 2-441 |
| Cow position: | chr16:29676574-29676161 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 4-441 |
| Cow position: | chr16:2484413-2483995 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 289, 80 |
| Conread position: | 4-441 |
| Cow position: | chr16:15183531-15183947 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 13-436 |
| Cow position: | chr16:25084350-25084762 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 327, 82 |
| Conread position: | 15-265 |
| Cow position: | chr16:37446612-37446384 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 15-276 |
| Cow position: | chr16:2412280-2412037 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 183 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 15-305 |
| Cow position: | chr16:51083305-51083583 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 178, 74 |
| Conread position: | 15-429 |
| Cow position: | chr16:1429953-1430360 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 92 |
| Conread position: | 15-433 |
| Cow position: | chr16:49257863-49257437 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 37 |
| Conread position: | 15-439 |
| Cow position: | chr16:408297-407890 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 384, 68 |
| Conread position: | 15-440 |
| Cow position: | chr16:29045766-29046164 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 15-441 |
| Cow position: | chr16:7676959-7676552 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 69 |
| Conread position: | 15-441 |
| Cow position: | chr16:9776872-9777276 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 15-441 |
| Cow position: | chr16:12539188-12538780 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 15-441 |
| Cow position: | chr16:25440351-25440763 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 295, 69 |
| Conread position: | 15-441 |
| Cow position: | chr16:25458739-25458326 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 69 |
| Conread position: | 15-441 |
| Cow position: | chr16:40297438-40297031 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 15-447 |
| Cow position: | chr16:8817370-8816955 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 16-441 |
| Cow position: | chr16:32934874-32935280 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 285 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 61, 122 |
| Conread position: | 17-402 |
| Cow position: | chr16:16687604-16687975 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 67 |
| Conread position: | 17-432 |
| Cow position: | chr16:42051610-42051221 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 281 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 15, 79 |
| Conread position: | 17-439 |
| Cow position: | chr16:19714101-19713706 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 17 |
| Conread position: | 18-432 |
| Cow position: | chr16:18688392-18687993 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 14 |
| Conread position: | 18-441 |
| Cow position: | chr16:31468-31892 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 300 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 80, 183 |
| Conread position: | 18-441 |
| Cow position: | chr16:28171655-28171214 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 214 |
| Conread position: | 18-442 |
| Cow position: | chr16:10376558-10376128 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 298 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 80, 230 |
| Conread position: | 19-439 |
| Cow position: | chr16:32605531-32605970 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 135 |
| Conread position: | 19-440 |
| Cow position: | chr16:10204677-10204270 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 348, 65 |
| Conread position: | 19-441 |
| Cow position: | chr16:2728576-2728170 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 19-441 |
| Cow position: | chr16:5660580-5661005 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 275 |
| Conread position: | 35-441 |
| Cow position: | chr16:4303741-4303326 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 273 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 63, 141 |
| Conread position: | 35-441 |
| Cow position: | chr16:43898513-43898124 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 53-428 |
| Cow position: | chr16:31593142-31592775 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 82-441 |
| Cow position: | chr16:24881904-24881544 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 298 |
| Conread position: | 85-441 |
| Cow position: | chr16:23253710-23253359 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 86-441 |
| Cow position: | chr16:25157422-25157074 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 80 |
| Conread position: | 89-427 |
| Cow position: | chr16:9929354-9929691 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 20 |
| Conread position: | 97-435 |
| Cow position: | chr16:51685249-51685587 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 33, 21 |
| Conread position: | 98-396 |
| Cow position: | chr16:21185083-21185381 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 98-441 |
| Cow position: | chr16:6942424-6942767 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 99-434 |
| Cow position: | chr16:9457327-9457664 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 14, 82 |
| Conread position: | 99-441 |
| Cow position: | chr16:44964852-44965202 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 234 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 23, 219 |
| Conread position: | 104-365 |
| Cow position: | chr16:14666980-14666719 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 104-441 |
| Cow position: | chr16:15565560-15565895 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 107-349 |
| Cow position: | chr16:5589011-5589251 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 209, 0 |
| Conread position: | 107-433 |
| Cow position: | chr16:15491532-15491845 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 53 |
| Conread position: | 107-441 |
| Cow position: | chr16:1568636-1568309 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 72 |
| Conread position: | 107-441 |
| Cow position: | chr16:25340786-25341113 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 116-441 |
| Cow position: | chr16:7905465-7905787 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 118-448 |
| Cow position: | chr16:54647150-54647479 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 43, 137 |
| Conread position: | 120-441 |
| Cow position: | chr16:28472272-28471951 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 121-432 |
| Cow position: | chr16:31376399-31376105 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 278, 20 |
| Conread position: | 122-348 |
| Cow position: | chr16:5648069-5648290 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 188, 101 |
| Conread position: | 127-393 |
| Cow position: | chr16:2239894-2239634 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 128-441 |
| Cow position: | chr16:29982106-29982413 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 73, 158 |
| Conread position: | 131-436 |
| Cow position: | chr16:42740576-42740282 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 142-402 |
| Cow position: | chr16:15369287-15369539 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 194 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 54, 126 |
| Conread position: | 145-435 |
| Cow position: | chr16:14422566-14422855 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 256, 17 |
| Conread position: | 160-446 |
| Cow position: | chr16:11052040-11052318 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 19 |
| Conread position: | 172-441 |
| Cow position: | chr16:6549646-6549377 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 161 |
| Conread position: | 175-441 |
| Cow position: | chr16:10437136-10437399 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 0 |
| Conread position: | 191-441 |
| Cow position: | chr16:36282291-36282545 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 193-441 |
| Cow position: | chr16:26662650-26662892 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 186 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 202, 89 |
| Conread position: | 198-362 |
| Cow position: | chr16:39818526-39818692 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 198-441 |
| Cow position: | chr16:23982213-23982456 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 199-356 |
| Cow position: | chr16:5483419-5483264 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 135, 83 |
| Conread position: | 199-441 |
| Cow position: | chr16:27734902-27734660 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 177 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 283-441 |
| Cow position: | chr16:2411983-2411825 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.