Cow genome map
| Conread name: | Ss1.1-Pig1-122O09.5 |
| Conread position: | 2-190 |
| Cow position: | chr17:455557-455374 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 2-332 |
| Cow position: | chr17:1945491-1945790 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 299, 44 |
| Conread position: | 2-441 |
| Cow position: | chr17:1284451-1284038 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 97 |
| Conread position: | 15-398 |
| Cow position: | chr17:31200760-31200387 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 253 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 292, 86 |
| Conread position: | 15-400 |
| Cow position: | chr17:6259019-6259382 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 382, 69 |
| Conread position: | 15-402 |
| Cow position: | chr17:15370397-15370759 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 15-434 |
| Cow position: | chr17:14326168-14325780 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 80 |
| Conread position: | 15-436 |
| Cow position: | chr17:2249273-2248865 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 15-436 |
| Cow position: | chr17:4059412-4059824 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 55 |
| Conread position: | 15-440 |
| Cow position: | chr17:40803704-40804119 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 69 |
| Conread position: | 15-441 |
| Cow position: | chr17:153148-152749 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 63, 28 |
| Conread position: | 15-441 |
| Cow position: | chr17:13857474-13857051 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 51 |
| Conread position: | 15-441 |
| Cow position: | chr17:18104369-18103959 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 15-441 |
| Cow position: | chr17:43987798-43988256 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 298 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 73, 418 |
| Conread position: | 15-448 |
| Cow position: | chr17:16860260-16859828 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 300 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 266, 31 |
| Conread position: | 18-440 |
| Cow position: | chr17:2261402-2261830 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 285 |
| Conread position: | 18-441 |
| Cow position: | chr17:8208391-8208828 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 306 |
| Conread position: | 18-441 |
| Cow position: | chr17:11088423-11088003 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 114 |
| Conread position: | 18-441 |
| Cow position: | chr17:14217744-14217303 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 18-441 |
| Cow position: | chr17:20666439-20666005 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 18-441 |
| Cow position: | chr17:24780333-24780769 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 165 |
| Conread position: | 19-436 |
| Cow position: | chr17:4080960-4081367 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 175, 25 |
| Conread position: | 19-441 |
| Cow position: | chr17:229007-228580 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 287 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 74, 102 |
| Conread position: | 19-441 |
| Cow position: | chr17:1383529-1383093 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 392 |
| Conread position: | 19-441 |
| Cow position: | chr17:11782654-11783092 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 19-441 |
| Cow position: | chr17:19270031-19269645 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 286 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 348, 70 |
| Conread position: | 19-441 |
| Cow position: | chr17:22160198-22160637 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 21-374 |
| Cow position: | chr17:6119435-6119805 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 23-441 |
| Cow position: | chr17:14893448-14893882 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 295 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 54, 190 |
| Conread position: | 88-360 |
| Cow position: | chr17:180992-181257 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 88-436 |
| Cow position: | chr17:15157583-15157245 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 89-439 |
| Cow position: | chr17:2578934-2579278 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 98-396 |
| Cow position: | chr17:249307-249598 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 212 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 208, 0 |
| Conread position: | 98-400 |
| Cow position: | chr17:9654071-9653768 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 297, 0 |
| Conread position: | 98-433 |
| Cow position: | chr17:24633335-24633670 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 103-393 |
| Cow position: | chr17:15322214-15322504 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 104-429 |
| Cow position: | chr17:13929059-13929377 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 106-324 |
| Cow position: | chr17:31768884-31768666 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 107-354 |
| Cow position: | chr17:18302377-18302139 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 225, 11 |
| Conread position: | 115-393 |
| Cow position: | chr17:55284-55009 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 201 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 46, 62 |
| Conread position: | 118-441 |
| Cow position: | chr17:20401076-20401405 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 9, 55 |
| Conread position: | 120-441 |
| Cow position: | chr17:3643435-3643115 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 122-427 |
| Cow position: | chr17:2146625-2146925 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 188, 18 |
| Conread position: | 124-441 |
| Cow position: | chr17:16889533-16889846 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 129 |
| Conread position: | 131-328 |
| Cow position: | chr17:18186818-18186619 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 24, 193 |
| Conread position: | 131-401 |
| Cow position: | chr17:44853515-44853247 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 188 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 24, 100 |
| Conread position: | 131-441 |
| Cow position: | chr17:22430071-22429761 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 126 |
| Conread position: | 131-441 |
| Cow position: | chr17:23857636-23857313 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 234 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 97, 45 |
| Conread position: | 141-394 |
| Cow position: | chr17:4294818-4295052 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 142-441 |
| Cow position: | chr17:25737086-25737384 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 240, 0 |
| Conread position: | 156-430 |
| Cow position: | chr17:19609463-19609183 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 43, 163 |
| Conread position: | 166-434 |
| Cow position: | chr17:39933134-39933397 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 124, 167 |
| Conread position: | 168-396 |
| Cow position: | chr17:2286824-2287053 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 175 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 19, 165 |
| Conread position: | 168-402 |
| Cow position: | chr17:20088300-20088071 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 19, 55 |
| Conread position: | 169-441 |
| Cow position: | chr17:15435244-15435512 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 193 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 172-441 |
| Cow position: | chr17:27345259-27345526 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 198 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 178 |
| Conread position: | 176-400 |
| Cow position: | chr17:22131397-22131622 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 187-440 |
| Cow position: | chr17:6002546-6002292 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 127, 181 |
| Conread position: | 191-434 |
| Cow position: | chr17:32024724-32024482 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 0 |
| Conread position: | 194-436 |
| Cow position: | chr17:28109570-28109802 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 197-441 |
| Cow position: | chr17:35591702-35591936 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 239-434 |
| Cow position: | chr17:2173401-2173593 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 156, 80 |
| Conread position: | 243-441 |
| Cow position: | chr17:15849924-15850119 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 252-433 |
| Cow position: | chr17:1879624-1879806 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 121, 161 |
| Conread position: | 255-396 |
| Cow position: | chr17:2737914-2738054 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 306-441 |
| Cow position: | chr17:20183640-20183506 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 34, 112 |
Show alignments to all cow chromosomes.