Cow genome map
| Conread name: | Ss1.1-Pig1-122O09.5 |
| Conread position: | 1-441 |
| Cow position: | chr18:16660504-16660075 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 2-342 |
| Cow position: | chr18:29236273-29236609 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 2-441 |
| Cow position: | chr18:43147406-43146995 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 60 |
| Conread position: | 15-195 |
| Cow position: | chr18:32293310-32293481 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 16, 83 |
| Conread position: | 15-398 |
| Cow position: | chr18:14129814-14130180 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 15-429 |
| Cow position: | chr18:37504585-37504980 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 15-429 |
| Cow position: | chr18:45958217-45958608 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 276 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 15-433 |
| Cow position: | chr18:54024848-54024437 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 416, 80 |
| Conread position: | 15-440 |
| Cow position: | chr18:33335385-33335796 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 80 |
| Conread position: | 15-441 |
| Cow position: | chr18:16177094-16176678 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 15-441 |
| Cow position: | chr18:28974378-28973974 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 15-441 |
| Cow position: | chr18:36507852-36508262 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 15-441 |
| Cow position: | chr18:41841306-41840896 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 15-441 |
| Cow position: | chr18:51480359-51480766 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 91 |
| Conread position: | 15-445 |
| Cow position: | chr18:11275596-11275170 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 299 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 78, 43 |
| Conread position: | 16-284 |
| Cow position: | chr18:43200313-43200566 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 181 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 18-440 |
| Cow position: | chr18:27838775-27838375 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 66 |
| Conread position: | 18-441 |
| Cow position: | chr18:19351866-19352315 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 18-441 |
| Cow position: | chr18:23797173-23797578 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 18-441 |
| Cow position: | chr18:44621247-44621688 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 157 |
| Conread position: | 18-441 |
| Cow position: | chr18:51659916-51660346 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 296 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 70, 158 |
| Conread position: | 18-441 |
| Cow position: | chr18:55089435-55088996 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 19-441 |
| Cow position: | chr18:25349564-25349968 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 19-441 |
| Cow position: | chr18:37586173-37585734 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 88-441 |
| Cow position: | chr18:16078281-16078628 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 88-441 |
| Cow position: | chr18:47741594-47741947 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 98-326 |
| Cow position: | chr18:23746386-23746158 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 98-441 |
| Cow position: | chr18:33953984-33953638 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 237 |
| Conread position: | 119-441 |
| Cow position: | chr18:39748186-39748507 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 76 |
| Conread position: | 120-425 |
| Cow position: | chr18:54002112-54002405 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 217 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 128-441 |
| Cow position: | chr18:14415596-14415905 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 17 |
| Conread position: | 128-441 |
| Cow position: | chr18:37599913-37599598 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 36, 19 |
| Conread position: | 139-433 |
| Cow position: | chr18:54172216-54171921 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 92 |
| Conread position: | 153-436 |
| Cow position: | chr18:35335123-35335413 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 207 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 160-441 |
| Cow position: | chr18:48221530-48221806 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 163-441 |
| Cow position: | chr18:23944720-23944442 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 172-441 |
| Cow position: | chr18:47719909-47719640 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 201 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 140, 234 |
| Conread position: | 176-431 |
| Cow position: | chr18:51310251-51310505 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 215, 116 |
| Conread position: | 176-436 |
| Cow position: | chr18:33358529-33358791 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 215 |
| Conread position: | 176-441 |
| Cow position: | chr18:2020013-2019757 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 193 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 7, 17 |
| Conread position: | 187-441 |
| Cow position: | chr18:22602162-22602416 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 188-441 |
| Cow position: | chr18:1520804-1521060 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 120 |
| Conread position: | 191-441 |
| Cow position: | chr18:32293456-32293704 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 183 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 193-441 |
| Cow position: | chr18:40478066-40478312 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 194-441 |
| Cow position: | chr18:17992879-17992633 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 0 |
| Conread position: | 194-441 |
| Cow position: | chr18:33268526-33268770 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 197-441 |
| Cow position: | chr18:51257668-51257912 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 198-441 |
| Cow position: | chr18:32651682-32651924 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 203 |
| Conread position: | 205-441 |
| Cow position: | chr18:27986722-27986957 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 174 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 178, 0 |
| Conread position: | 218-436 |
| Cow position: | chr18:19540164-19539949 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 177, 53 |
| Conread position: | 256-432 |
| Cow position: | chr18:51610750-51610926 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 142, 147 |
| Conread position: | 256-441 |
| Cow position: | chr18:51464727-51464546 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 138, 0 |
Show alignments to all cow chromosomes.