Cow genome map
| Conread name: | Ss1.1-Pig1-122O09.5 |
| Conread position: | 1-395 |
| Cow position: | chr19:76733-76348 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 380, 94 |
| Conread position: | 2-436 |
| Cow position: | chr19:4533244-4532819 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 83 |
| Conread position: | 2-441 |
| Cow position: | chr19:33930-34353 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 295, 82 |
| Conread position: | 11-195 |
| Cow position: | chr19:39546187-39546366 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 15-282 |
| Cow position: | chr19:562186-561929 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 15-330 |
| Cow position: | chr19:544384-544068 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 7 |
| Conread position: | 15-386 |
| Cow position: | chr19:33872767-33873117 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 15-402 |
| Cow position: | chr19:6552931-6553288 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 262 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 26, 20 |
| Conread position: | 15-402 |
| Cow position: | chr19:36476885-36477250 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 15-441 |
| Cow position: | chr19:772102-772532 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 159 |
| Conread position: | 15-441 |
| Cow position: | chr19:4252825-4252425 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 15-441 |
| Cow position: | chr19:10672783-10672373 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 15-441 |
| Cow position: | chr19:28582112-28581721 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 363, 69 |
| Conread position: | 15-441 |
| Cow position: | chr19:39390050-39390450 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 317, 69 |
| Conread position: | 15-441 |
| Cow position: | chr19:40852907-40852497 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 15-441 |
| Cow position: | chr19:55078273-55078679 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 16-330 |
| Cow position: | chr19:27053304-27053012 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 229 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 18-441 |
| Cow position: | chr19:7341565-7342001 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 374 |
| Conread position: | 18-441 |
| Cow position: | chr19:52152750-52152328 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 292 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 75, 150 |
| Conread position: | 19-441 |
| Cow position: | chr19:171738-172144 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 19-441 |
| Cow position: | chr19:32193078-32193510 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 293 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 68, 239 |
| Conread position: | 19-441 |
| Cow position: | chr19:32244166-32244617 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 297 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 19-441 |
| Cow position: | chr19:43143214-43143649 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 162 |
| Conread position: | 20-441 |
| Cow position: | chr19:32212565-32212137 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 168 |
| Conread position: | 21-435 |
| Cow position: | chr19:685349-685770 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 294 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 67, 292 |
| Conread position: | 22-441 |
| Cow position: | chr19:4385008-4385418 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 89 |
| Conread position: | 35-441 |
| Cow position: | chr19:33941157-33941545 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 38-441 |
| Cow position: | chr19:30754715-30755111 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 149, 45 |
| Conread position: | 60-441 |
| Cow position: | chr19:260994-261369 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 50 |
| Conread position: | 73-423 |
| Cow position: | chr19:547958-548304 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 72, 25 |
| Conread position: | 83-441 |
| Cow position: | chr19:171163-170807 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 247 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 38, 28 |
| Conread position: | 88-441 |
| Cow position: | chr19:378293-377941 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 249 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 220, 69 |
| Conread position: | 88-441 |
| Cow position: | chr19:28592870-28593210 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 242 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 202, 71 |
| Conread position: | 90-435 |
| Cow position: | chr19:35376147-35376484 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 22, 34 |
| Conread position: | 92-435 |
| Cow position: | chr19:32183857-32183521 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 51, 19 |
| Conread position: | 92-442 |
| Cow position: | chr19:40888063-40887712 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 247 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 36, 15 |
| Conread position: | 97-451 |
| Cow position: | chr19:37496-37839 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 234 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 69, 194 |
| Conread position: | 103-441 |
| Cow position: | chr19:440049-439710 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 233 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 22, 55 |
| Conread position: | 107-441 |
| Cow position: | chr19:203562-203896 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 182 |
| Conread position: | 110-441 |
| Cow position: | chr19:29209169-29209494 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 48 |
| Conread position: | 118-369 |
| Cow position: | chr19:801594-801852 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 178 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 118-436 |
| Cow position: | chr19:20125245-20125549 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 220 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 229, 40 |
| Conread position: | 131-441 |
| Cow position: | chr19:39546264-39546557 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 22, 35 |
| Conread position: | 135-435 |
| Cow position: | chr19:416274-416580 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 218 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 8, 17 |
| Conread position: | 165-444 |
| Cow position: | chr19:35978923-35979203 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 188 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 7, 178 |
| Conread position: | 167-441 |
| Cow position: | chr19:30371934-30372215 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 203 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 20, 219 |
| Conread position: | 171-441 |
| Cow position: | chr19:31341387-31341639 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 21, 10 |
| Conread position: | 180-436 |
| Cow position: | chr19:32238184-32237929 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 7, 50 |
| Conread position: | 187-478 |
| Cow position: | chr19:5865161-5864872 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 191 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 62, 151 |
| Conread position: | 188-400 |
| Cow position: | chr19:350894-350675 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 162 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 97, 74 |
| Conread position: | 189-358 |
| Cow position: | chr19:25622737-25622567 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 119 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 194-441 |
| Cow position: | chr19:7487999-7488246 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 194-441 |
| Cow position: | chr19:39688236-39688476 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 184 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 197-433 |
| Cow position: | chr19:32665222-32665458 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 197-441 |
| Cow position: | chr19:1031803-1032039 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 262-432 |
| Cow position: | chr19:893848-893675 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 127, 57 |
Show alignments to all cow chromosomes.