Cow genome map
| Conread name: | Ss1.1-Pig1-122O09.5 |
| Conread position: | 1-322 |
| Cow position: | chr21:41952763-41953073 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 94 |
| Conread position: | 1-432 |
| Cow position: | chr21:4183109-4183539 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 158 |
| Conread position: | 2-434 |
| Cow position: | chr21:358608-359019 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 83 |
| Conread position: | 2-441 |
| Cow position: | chr21:34259616-34259210 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 2-441 |
| Cow position: | chr21:35595976-35596377 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 297 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 11-441 |
| Cow position: | chr21:2415828-2416245 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 61 |
| Conread position: | 11-441 |
| Cow position: | chr21:2501531-2501943 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 73 |
| Conread position: | 15-305 |
| Cow position: | chr21:2542279-2541998 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 209 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 280, 68 |
| Conread position: | 15-367 |
| Cow position: | chr21:4590370-4590031 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 15-396 |
| Cow position: | chr21:5016460-5016064 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 271 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 73, 149 |
| Conread position: | 15-429 |
| Cow position: | chr21:7267939-7267544 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 15-432 |
| Cow position: | chr21:2884137-2883734 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 376, 69 |
| Conread position: | 15-436 |
| Cow position: | chr21:2530512-2530122 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 292, 67 |
| Conread position: | 15-439 |
| Cow position: | chr21:47947684-47948116 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 293 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 78, 31 |
| Conread position: | 15-441 |
| Cow position: | chr21:1292582-1292168 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 64 |
| Conread position: | 15-441 |
| Cow position: | chr21:2769859-2769452 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 376, 79 |
| Conread position: | 15-441 |
| Cow position: | chr21:10566278-10566683 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 78 |
| Conread position: | 15-441 |
| Cow position: | chr21:11505154-11505596 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 391 |
| Conread position: | 15-441 |
| Cow position: | chr21:31560048-31559645 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 401, 69 |
| Conread position: | 15-441 |
| Cow position: | chr21:48115706-48116117 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 384, 69 |
| Conread position: | 15-447 |
| Cow position: | chr21:40272212-40271805 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 69 |
| Conread position: | 18-326 |
| Cow position: | chr21:19609685-19610010 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 228 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 18-441 |
| Cow position: | chr21:10849682-10850089 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 18-441 |
| Cow position: | chr21:26638887-26638454 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 283 |
| Conread position: | 19-314 |
| Cow position: | chr21:2454289-2454600 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 69, 294 |
| Conread position: | 19-348 |
| Cow position: | chr21:39580292-39580638 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 226 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 19-402 |
| Cow position: | chr21:47939093-47939450 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 15 |
| Conread position: | 19-441 |
| Cow position: | chr21:4090219-4090660 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 19-441 |
| Cow position: | chr21:12056420-12055991 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 385 |
| Conread position: | 19-441 |
| Cow position: | chr21:17572500-17572930 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 289 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 68, 226 |
| Conread position: | 19-441 |
| Cow position: | chr21:27708332-27708771 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 19-441 |
| Cow position: | chr21:33250998-33251401 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 88 |
| Conread position: | 19-441 |
| Cow position: | chr21:37044492-37044922 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 289 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 68, 225 |
| Conread position: | 21-441 |
| Cow position: | chr21:2510230-2510661 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 223 |
| Conread position: | 73-441 |
| Cow position: | chr21:2789345-2788982 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 44, 105 |
| Conread position: | 91-441 |
| Cow position: | chr21:11453994-11453647 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 303, 0 |
| Conread position: | 97-441 |
| Cow position: | chr21:39424734-39425072 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 232 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 49, 195 |
| Conread position: | 98-441 |
| Cow position: | chr21:2476841-2476501 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 234 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 75, 68 |
| Conread position: | 98-441 |
| Cow position: | chr21:26819347-26819012 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 0 |
| Conread position: | 98-441 |
| Cow position: | chr21:28529876-28529535 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 0 |
| Conread position: | 98-441 |
| Cow position: | chr21:46915258-46915596 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 0 |
| Conread position: | 101-441 |
| Cow position: | chr21:145590-145928 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 103-402 |
| Cow position: | chr21:4083325-4083620 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 8, 16 |
| Conread position: | 104-396 |
| Cow position: | chr21:3778445-3778732 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 62 |
| Conread position: | 104-441 |
| Cow position: | chr21:1190714-1191051 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 111-435 |
| Cow position: | chr21:21516890-21517206 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 224 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 16, 24 |
| Conread position: | 117-441 |
| Cow position: | chr21:2716984-2716672 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 20, 47 |
| Conread position: | 121-435 |
| Cow position: | chr21:21948110-21947798 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 7, 86 |
| Conread position: | 128-303 |
| Cow position: | chr21:35089399-35089574 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 131-441 |
| Cow position: | chr21:13124297-13123990 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 56, 48 |
| Conread position: | 131-441 |
| Cow position: | chr21:23860481-23860792 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 20, 190 |
| Conread position: | 133-390 |
| Cow position: | chr21:18692458-18692717 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 172 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 62, 22 |
| Conread position: | 133-441 |
| Cow position: | chr21:34055213-34054905 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 9, 111 |
| Conread position: | 134-441 |
| Cow position: | chr21:3614993-3615301 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 43 |
| Conread position: | 142-447 |
| Cow position: | chr21:30600203-30599905 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 168-441 |
| Cow position: | chr21:4222960-4222678 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 204 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 19, 91 |
| Conread position: | 175-330 |
| Cow position: | chr21:23811656-23811808 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 186-402 |
| Cow position: | chr21:25992864-25992650 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 127, 94 |
| Conread position: | 189-432 |
| Cow position: | chr21:9891370-9891618 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 77 |
| Conread position: | 189-441 |
| Cow position: | chr21:6699804-6699547 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 82, 221 |
| Conread position: | 190-435 |
| Cow position: | chr21:21031498-21031739 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 178, 0 |
| Conread position: | 191-436 |
| Cow position: | chr21:3426245-3426489 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 121, 37 |
| Conread position: | 193-427 |
| Cow position: | chr21:2674876-2674642 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 193-436 |
| Cow position: | chr21:34292780-34293022 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 225 |
| Conread position: | 194-441 |
| Cow position: | chr21:4076609-4076854 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 182 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 112, 201 |
| Conread position: | 194-441 |
| Cow position: | chr21:36714404-36714641 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 167 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 87, 13 |
| Conread position: | 196-441 |
| Cow position: | chr21:30561566-30561811 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.