Cow genome map

Conread name: Ss1.1-Pig1-122O09.5

Conread position: 1-402
Cow position: chr22:45880703-45880337 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 333, 14

Conread position: 1-429
Cow position: chr22:3307310-3306908 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 0

Conread position: 1-433
Cow position: chr22:1321041-1321441 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 70

Conread position: 2-432
Cow position: chr22:36736194-36736605 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 393, 93

Conread position: 2-444
Cow position: chr22:36534542-36534124 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 36, 32

Conread position: 10-327
Cow position: chr22:36180549-36180867 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 220
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 87, 270

Conread position: 10-441
Cow position: chr22:27310389-27309937 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 11-441
Cow position: chr22:5307506-5307954 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 178

Conread position: 12-441
Cow position: chr22:1285516-1285095 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 37

Conread position: 15-284
Cow position: chr22:27386964-27386707 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 192
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 58, 0

Conread position: 15-395
Cow position: chr22:526483-526119 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 90

Conread position: 15-398
Cow position: chr22:44456739-44457107 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 213, 20

Conread position: 15-401
Cow position: chr22:13772209-13772586 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 80

Conread position: 15-429
Cow position: chr22:15850759-15851159 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 81

Conread position: 15-435
Cow position: chr22:1294074-1293666 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 68

Conread position: 15-439
Cow position: chr22:19144271-19143865 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 15-441
Cow position: chr22:561272-560863 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 15-441
Cow position: chr22:17329310-17328903 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 15-441
Cow position: chr22:21588765-21589169 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 15-441
Cow position: chr22:31312771-31313177 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 15-441
Cow position: chr22:34167747-34168168 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 0

Conread position: 15-441
Cow position: chr22:37264847-37265290 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 160

Conread position: 15-441
Cow position: chr22:39470090-39469683 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 15-441
Cow position: chr22:42990603-42991008 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 15-441
Cow position: chr22:44933406-44933816 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 15-441
Cow position: chr22:46585893-46585475 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 0

Conread position: 16-436
Cow position: chr22:7276946-7277354 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 6

Conread position: 17-442
Cow position: chr22:39882735-39882339 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 0

Conread position: 18-395
Cow position: chr22:16199893-16200283 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 252

Conread position: 18-439
Cow position: chr22:44489292-44489721 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 358

Conread position: 18-440
Cow position: chr22:44370217-44369785 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 293

Conread position: 18-441
Cow position: chr22:693039-693468 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 28

Conread position: 18-441
Cow position: chr22:1878234-1878628 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 279
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 123, 16

Conread position: 18-441
Cow position: chr22:10910458-10910021 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 363

Conread position: 18-441
Cow position: chr22:24949226-24949666 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 0

Conread position: 18-441
Cow position: chr22:35672959-35672519 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 0

Conread position: 19-433
Cow position: chr22:37131087-37131479 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 286
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 196, 77

Conread position: 19-439
Cow position: chr22:6984652-6985089 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 19-441
Cow position: chr22:10546048-10546481 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 290
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 74, 402

Conread position: 34-401
Cow position: chr22:1271062-1270702 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 12

Conread position: 35-432
Cow position: chr22:37073712-37073335 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 280
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 19, 62

Conread position: 38-304
Cow position: chr22:48004107-48004367 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 179
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 176, 45

Conread position: 39-436
Cow position: chr22:6504209-6503839 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 273
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 56, 0

Conread position: 40-368
Cow position: chr22:12732616-12732308 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 235
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 17, 9

Conread position: 73-441
Cow position: chr22:37067452-37067078 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 262
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 44, 128

Conread position: 83-396
Cow position: chr22:327669-327356 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 48

Conread position: 84-441
Cow position: chr22:5933488-5933148 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 247
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 223, 55

Conread position: 88-441
Cow position: chr22:18476277-18475929 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 0

Conread position: 90-441
Cow position: chr22:8136710-8136360 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 262
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 11, 29

Conread position: 98-441
Cow position: chr22:3278856-3278517 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 235
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 240, 182

Conread position: 98-441
Cow position: chr22:5233803-5233469 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 233
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 182, 0

Conread position: 104-260
Cow position: chr22:15314857-15314701 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 113-441
Cow position: chr22:31335522-31335197 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 120-441
Cow position: chr22:11030502-11030796 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 222
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 276, 37

Conread position: 121-399
Cow position: chr22:35943876-35943598 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 181
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 60, 49

Conread position: 126-441
Cow position: chr22:33350688-33351005 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 202
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 6, 78

Conread position: 129-429
Cow position: chr22:46636173-46635873 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 207
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 15, 8

Conread position: 131-441
Cow position: chr22:10077222-10076915 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 215
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 49, 28

Conread position: 141-441
Cow position: chr22:309261-309550 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 199
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 200, 17

Conread position: 143-441
Cow position: chr22:44395321-44395617 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 0

Conread position: 150-441
Cow position: chr22:44353402-44353111 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 252

Conread position: 151-402
Cow position: chr22:42771098-42771345 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 185
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 7, 0

Conread position: 151-436
Cow position: chr22:1318944-1319228 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 28

Conread position: 160-442
Cow position: chr22:41420129-41419851 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 227

Conread position: 163-336
Cow position: chr22:40380758-40380930 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 125
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 24, 16

Conread position: 168-429
Cow position: chr22:118253-117993 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 194
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 19, 246

Conread position: 170-347
Cow position: chr22:18930143-18930320 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 123
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 176-441
Cow position: chr22:5672310-5672573 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 191
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 227, 237

Conread position: 176-441
Cow position: chr22:46852914-46853178 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 188
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 158, 205

Conread position: 189-441
Cow position: chr22:36861946-36861694 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 193-441
Cow position: chr22:18816793-18816545 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 179
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 197, 150

Conread position: 207-402
Cow position: chr22:158312-158113 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 151
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 106, 0

Conread position: 214-441
Cow position: chr22:32485718-32485500 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 169
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 78, 0

Conread position: 233-441
Cow position: chr22:4065269-4065477 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 146
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.