Cow genome map
| Conread name: | Ss1.1-Pig1-122O09.5 |
| Conread position: | 1-441 |
| Cow position: | chr23:1025640-1025223 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 48 |
| Conread position: | 2-192 |
| Cow position: | chr23:8981394-8981211 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 132 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 2-441 |
| Cow position: | chr23:4276381-4276791 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 393, 93 |
| Conread position: | 6-435 |
| Cow position: | chr23:19332987-19332568 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 268 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 307, 39 |
| Conread position: | 8-419 |
| Cow position: | chr23:3013060-3013443 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 287 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 291, 77 |
| Conread position: | 10-402 |
| Cow position: | chr23:19449437-19449826 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 256 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 185, 92 |
| Conread position: | 11-321 |
| Cow position: | chr23:15176480-15176768 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 11-441 |
| Cow position: | chr23:4509520-4509937 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 96 |
| Conread position: | 15-204 |
| Cow position: | chr23:2573709-2573890 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 15-395 |
| Cow position: | chr23:14975368-14974978 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 292 |
| Conread position: | 15-426 |
| Cow position: | chr23:16617417-16617028 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 273 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 26, 20 |
| Conread position: | 15-441 |
| Cow position: | chr23:2027698-2027282 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 69 |
| Conread position: | 15-441 |
| Cow position: | chr23:2715765-2716188 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 15-441 |
| Cow position: | chr23:4641193-4640788 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 15-441 |
| Cow position: | chr23:15220466-15220061 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 15-441 |
| Cow position: | chr23:19488959-19489374 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 15-441 |
| Cow position: | chr23:19951191-19950747 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 15-441 |
| Cow position: | chr23:22147850-22147421 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 100 |
| Conread position: | 15-441 |
| Cow position: | chr23:27398933-27399340 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 69 |
| Conread position: | 15-441 |
| Cow position: | chr23:28912840-28913249 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 69 |
| Conread position: | 15-441 |
| Cow position: | chr23:36031943-36031535 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 286, 69 |
| Conread position: | 19-441 |
| Cow position: | chr23:4433876-4434301 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 296 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 68, 48 |
| Conread position: | 19-441 |
| Cow position: | chr23:28216691-28217127 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 205 |
| Conread position: | 20-433 |
| Cow position: | chr23:1140992-1141386 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 375, 63 |
| Conread position: | 22-441 |
| Cow position: | chr23:4359238-4359666 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 291 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 66, 201 |
| Conread position: | 24-330 |
| Cow position: | chr23:2756932-2757227 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 218 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 215, 77 |
| Conread position: | 88-452 |
| Cow position: | chr23:20301695-20302057 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 84 |
| Conread position: | 89-441 |
| Cow position: | chr23:4815563-4815909 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 101-393 |
| Cow position: | chr23:14966477-14966184 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 9 |
| Conread position: | 103-441 |
| Cow position: | chr23:34174686-34175020 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 8, 16 |
| Conread position: | 104-441 |
| Cow position: | chr23:11777986-11778322 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 202 |
| Conread position: | 105-441 |
| Cow position: | chr23:3882194-3881862 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 295, 0 |
| Conread position: | 115-441 |
| Cow position: | chr23:15525130-15525447 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 116-436 |
| Cow position: | chr23:31595678-31595346 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 213 |
| Conread position: | 120-352 |
| Cow position: | chr23:31652320-31652102 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 220, 14 |
| Conread position: | 123-441 |
| Cow position: | chr23:2796043-2795725 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 125-436 |
| Cow position: | chr23:2339927-2340236 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 199, 155 |
| Conread position: | 128-400 |
| Cow position: | chr23:22876104-22875836 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 199 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 66, 95 |
| Conread position: | 131-441 |
| Cow position: | chr23:2765844-2765542 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 24, 196 |
| Conread position: | 150-441 |
| Cow position: | chr23:31446361-31446651 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 168 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 156-441 |
| Cow position: | chr23:989091-988804 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 180 |
| Conread position: | 162-435 |
| Cow position: | chr23:5875211-5874945 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 17 |
| Conread position: | 162-441 |
| Cow position: | chr23:967790-967510 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 0 |
| Conread position: | 168-441 |
| Cow position: | chr23:7273225-7273492 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 106 |
| Conread position: | 171-435 |
| Cow position: | chr23:19017276-19017531 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 109, 116 |
| Conread position: | 178-441 |
| Cow position: | chr23:1330712-1330453 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 0 |
| Conread position: | 188-441 |
| Cow position: | chr23:5779502-5779248 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 0 |
| Conread position: | 194-433 |
| Cow position: | chr23:2574155-2574395 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 180 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 107, 118 |
| Conread position: | 194-441 |
| Cow position: | chr23:16481761-16481517 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 0 |
| Conread position: | 200-441 |
| Cow position: | chr23:30636706-30636465 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 230-384 |
| Cow position: | chr23:6469649-6469495 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 237-436 |
| Cow position: | chr23:8980856-8980661 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 152 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 165, 0 |
| Conread position: | 272-441 |
| Cow position: | chr23:2313570-2313401 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.