Cow genome map
| Conread name: | Ss1.1-Pig1-122O09.5 |
| Conread position: | 1-371 |
| Cow position: | chr25:18172775-18173144 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 259 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 27, 100 |
| Conread position: | 1-433 |
| Cow position: | chr25:18276387-18275952 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 83 |
| Conread position: | 12-436 |
| Cow position: | chr25:11934076-11933651 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 23 |
| Conread position: | 13-441 |
| Cow position: | chr25:18092481-18092898 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 15-372 |
| Cow position: | chr25:34014875-34014536 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 15-400 |
| Cow position: | chr25:23346223-23345864 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 267, 55 |
| Conread position: | 15-402 |
| Cow position: | chr25:18302242-18302617 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 81 |
| Conread position: | 15-441 |
| Cow position: | chr25:13780507-13780910 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 15-441 |
| Cow position: | chr25:18890544-18890136 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 15-441 |
| Cow position: | chr25:34347520-34347113 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 15-446 |
| Cow position: | chr25:26278746-26279150 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 397, 69 |
| Conread position: | 17-441 |
| Cow position: | chr25:17469213-17468817 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 17 |
| Conread position: | 18-426 |
| Cow position: | chr25:26921670-26922095 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 279 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 19-439 |
| Cow position: | chr25:22146969-22147371 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 19-441 |
| Cow position: | chr25:8674403-8674794 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 19-441 |
| Cow position: | chr25:32579425-32579846 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 103, 65 |
| Conread position: | 19-441 |
| Cow position: | chr25:33991590-33991177 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 268 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 103, 65 |
| Conread position: | 19-441 |
| Cow position: | chr25:35362979-35362544 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 400 |
| Conread position: | 20-441 |
| Cow position: | chr25:14015631-14016051 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 25 |
| Conread position: | 35-355 |
| Cow position: | chr25:17561115-17560802 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 88-451 |
| Cow position: | chr25:19916615-19916972 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 239 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 202, 0 |
| Conread position: | 93-398 |
| Cow position: | chr25:20493897-20494198 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 18, 7 |
| Conread position: | 97-396 |
| Cow position: | chr25:17590008-17589714 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 0 |
| Conread position: | 98-355 |
| Cow position: | chr25:17563365-17563111 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 188 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 98-441 |
| Cow position: | chr25:20777362-20777018 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 36 |
| Conread position: | 99-441 |
| Cow position: | chr25:12760072-12759718 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 230 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 11, 20 |
| Conread position: | 100-435 |
| Cow position: | chr25:19288807-19288478 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 220 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 12, 19 |
| Conread position: | 104-439 |
| Cow position: | chr25:25506192-25506527 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 121-427 |
| Cow position: | chr25:18255795-18255483 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 171, 66 |
| Conread position: | 122-441 |
| Cow position: | chr25:26866783-26867104 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 0 |
| Conread position: | 130-330 |
| Cow position: | chr25:32979191-32978990 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 131-436 |
| Cow position: | chr25:18028062-18027755 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 24, 179 |
| Conread position: | 149-441 |
| Cow position: | chr25:18411694-18411408 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 248, 158 |
| Conread position: | 160-436 |
| Cow position: | chr25:11375745-11375474 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 176-428 |
| Cow position: | chr25:18060979-18060720 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 13, 5 |
| Conread position: | 186-432 |
| Cow position: | chr25:21901706-21901956 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 111, 165 |
| Conread position: | 186-441 |
| Cow position: | chr25:20629201-20629456 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 189-402 |
| Cow position: | chr25:24171662-24171869 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 203-422 |
| Cow position: | chr25:12943796-12943578 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 164 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 191, 0 |
| Conread position: | 206-441 |
| Cow position: | chr25:34656801-34656566 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 175 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.