Cow genome map
| Conread name: | Ss1.1-Pig1-122O09.5 |
| Conread position: | 1-217 |
| Cow position: | chr29:45464354-45464148 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 193, 84 |
| Conread position: | 1-304 |
| Cow position: | chr29:8663697-8663987 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 2-317 |
| Cow position: | chr29:21431929-21431618 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 160, 41 |
| Conread position: | 2-441 |
| Cow position: | chr29:10848671-10848264 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 310 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 299, 93 |
| Conread position: | 2-441 |
| Cow position: | chr29:11048715-11049129 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 299, 86 |
| Conread position: | 4-439 |
| Cow position: | chr29:40503553-40503134 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 15-288 |
| Cow position: | chr29:42649795-42650057 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 191 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 15-288 |
| Cow position: | chr29:42801655-42801917 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 191 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 15-398 |
| Cow position: | chr29:45587861-45587494 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 15-433 |
| Cow position: | chr29:45459161-45459556 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 416, 69 |
| Conread position: | 15-439 |
| Cow position: | chr29:10648808-10648403 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 15-441 |
| Cow position: | chr29:49039-48629 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 15-441 |
| Cow position: | chr29:2099283-2099691 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 174, 69 |
| Conread position: | 15-441 |
| Cow position: | chr29:2689358-2689749 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 15-441 |
| Cow position: | chr29:2750946-2750545 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 15-441 |
| Cow position: | chr29:5957026-5957449 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 119 |
| Conread position: | 15-441 |
| Cow position: | chr29:6267056-6266647 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 15-441 |
| Cow position: | chr29:7431779-7431369 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 15-441 |
| Cow position: | chr29:19652545-19652955 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 15-441 |
| Cow position: | chr29:21246010-21246416 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 401, 31 |
| Conread position: | 15-441 |
| Cow position: | chr29:25933107-25932697 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 15-441 |
| Cow position: | chr29:26165381-26164976 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 15-441 |
| Cow position: | chr29:32539248-32539657 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 15-441 |
| Cow position: | chr29:35296302-35296721 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 274 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 106, 69 |
| Conread position: | 15-441 |
| Cow position: | chr29:38226431-38226848 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 70 |
| Conread position: | 15-441 |
| Cow position: | chr29:39080269-39079859 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 15-441 |
| Cow position: | chr29:43321988-43322406 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 47 |
| Conread position: | 15-447 |
| Cow position: | chr29:20250596-20251012 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 16-441 |
| Cow position: | chr29:104021-104420 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 286 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 178, 83 |
| Conread position: | 18-439 |
| Cow position: | chr29:32315447-32315885 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 292 |
| Conread position: | 18-441 |
| Cow position: | chr29:611205-610765 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 10 |
| Conread position: | 18-441 |
| Cow position: | chr29:13577835-13578265 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 298 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 70, 5 |
| Conread position: | 18-441 |
| Cow position: | chr29:16109135-16109576 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 19-441 |
| Cow position: | chr29:16021974-16022376 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 280 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 78, 121 |
| Conread position: | 19-441 |
| Cow position: | chr29:19623802-19623400 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 19-441 |
| Cow position: | chr29:23975274-23975683 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 380, 65 |
| Conread position: | 22-441 |
| Cow position: | chr29:10824512-10824109 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 318, 62 |
| Conread position: | 23-441 |
| Cow position: | chr29:27250920-27250488 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 157 |
| Conread position: | 98-340 |
| Cow position: | chr29:18857282-18857040 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 98-441 |
| Cow position: | chr29:15895342-15895004 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 234 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 74, 66 |
| Conread position: | 98-441 |
| Cow position: | chr29:28061162-28060819 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 161 |
| Conread position: | 107-441 |
| Cow position: | chr29:2841852-2841522 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 0 |
| Conread position: | 108-402 |
| Cow position: | chr29:14368460-14368755 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 204 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 99, 93 |
| Conread position: | 120-441 |
| Cow position: | chr29:31121335-31121652 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 122-436 |
| Cow position: | chr29:4635432-4635125 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 217, 49 |
| Conread position: | 128-441 |
| Cow position: | chr29:12796932-12796619 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 103 |
| Conread position: | 130-441 |
| Cow position: | chr29:30811087-30811379 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 154, 0 |
| Conread position: | 131-433 |
| Cow position: | chr29:9644183-9643884 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 11 |
| Conread position: | 141-399 |
| Cow position: | chr29:32890755-32891020 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 151, 0 |
| Conread position: | 165-377 |
| Cow position: | chr29:34752114-34751910 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 166-441 |
| Cow position: | chr29:34800230-34799963 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 200 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 168-429 |
| Cow position: | chr29:21543799-21543531 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 19, 144 |
| Conread position: | 168-429 |
| Cow position: | chr29:27041187-27040929 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 235 |
| Conread position: | 181-402 |
| Cow position: | chr29:14013059-14013280 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 129, 147 |
| Conread position: | 181-402 |
| Cow position: | chr29:14073354-14073131 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 83, 149 |
| Conread position: | 186-441 |
| Cow position: | chr29:43366399-43366150 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 39, 0 |
| Conread position: | 188-387 |
| Cow position: | chr29:2468346-2468147 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 188-441 |
| Cow position: | chr29:16769730-16769979 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 187 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 104, 0 |
| Conread position: | 193-439 |
| Cow position: | chr29:7840397-7840641 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 97, 115 |
| Conread position: | 293-434 |
| Cow position: | chr29:13853321-13853180 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 137, 61 |
| Conread position: | 293-436 |
| Cow position: | chr29:21427355-21427213 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 14, 0 |
Show alignments to all cow chromosomes.