Cow genome map

Conread name: Ss1.1-Pig1-122O09.5

Conread position: 1-396
Cow position: chr6:66231199-66231574 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 270
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 81, 0

Conread position: 2-436
Cow position: chr6:19453325-19453723 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 0

Conread position: 2-441
Cow position: chr6:11278312-11277895 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 0

Conread position: 11-400
Cow position: chr6:33458959-33459351 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 270
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 92, 48

Conread position: 11-436
Cow position: chr6:43795332-43794908 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 283
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 120, 139

Conread position: 15-317
Cow position: chr6:40555214-40554933 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 208
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 69, 0

Conread position: 15-330
Cow position: chr6:13318289-13317992 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 223
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 127, 69

Conread position: 15-381
Cow position: chr6:52735791-52736147 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 15-386
Cow position: chr6:3890091-3889738 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 0

Conread position: 15-398
Cow position: chr6:40314276-40314665 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 272
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 24, 193

Conread position: 15-433
Cow position: chr6:24238447-24238846 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 416, 69

Conread position: 15-433
Cow position: chr6:27468663-27469053 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 380, 69

Conread position: 15-441
Cow position: chr6:913027-913434 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 69

Conread position: 15-441
Cow position: chr6:3278554-3278145 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 15-441
Cow position: chr6:3488996-3488595 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 15-441
Cow position: chr6:5951839-5951431 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 15-441
Cow position: chr6:7142101-7141666 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 190

Conread position: 15-441
Cow position: chr6:8201128-8201538 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 15-441
Cow position: chr6:15141774-15141370 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 380, 69

Conread position: 15-441
Cow position: chr6:15281147-15280736 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 397, 69

Conread position: 15-441
Cow position: chr6:17598917-17598474 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 399

Conread position: 15-441
Cow position: chr6:21971073-21971479 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 15-441
Cow position: chr6:27530599-27530197 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 0

Conread position: 15-441
Cow position: chr6:28274388-28274789 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 15-441
Cow position: chr6:34893611-34893204 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 15-441
Cow position: chr6:35877320-35876913 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 57

Conread position: 15-441
Cow position: chr6:36525441-36525848 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 15-441
Cow position: chr6:39437034-39437446 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 15-441
Cow position: chr6:47044028-47043626 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 15-441
Cow position: chr6:65880256-65880672 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 90

Conread position: 15-441
Cow position: chr6:65908796-65909232 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 322

Conread position: 16-394
Cow position: chr6:65900519-65900151 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 324, 48

Conread position: 16-436
Cow position: chr6:38231665-38232076 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 351, 82

Conread position: 18-402
Cow position: chr6:21686301-21686661 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 0

Conread position: 18-435
Cow position: chr6:13103426-13103858 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 14

Conread position: 18-441
Cow position: chr6:332113-331660 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 300
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 70, 0

Conread position: 18-441
Cow position: chr6:2554077-2554513 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 167

Conread position: 18-441
Cow position: chr6:26671499-26671058 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 294
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 70, 299

Conread position: 18-441
Cow position: chr6:28062718-28063143 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 299
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 80, 10

Conread position: 18-441
Cow position: chr6:39907522-39907955 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 289

Conread position: 18-441
Cow position: chr6:44151176-44150752 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 298
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 66, 228

Conread position: 18-441
Cow position: chr6:68026148-68026587 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 25

Conread position: 19-436
Cow position: chr6:6935758-6935324 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 19-441
Cow position: chr6:2374077-2374509 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 314

Conread position: 19-441
Cow position: chr6:6477061-6476648 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 393, 16

Conread position: 19-441
Cow position: chr6:13977909-13978328 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 274
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 103, 65

Conread position: 19-441
Cow position: chr6:27168943-27169382 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 19-441
Cow position: chr6:40274625-40275064 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 295

Conread position: 19-441
Cow position: chr6:50498049-50497653 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 19-441
Cow position: chr6:55544927-55544521 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 0

Conread position: 20-440
Cow position: chr6:43617082-43617521 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 250

Conread position: 20-441
Cow position: chr6:57870636-57870198 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 25-346
Cow position: chr6:2111547-2111246 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 230
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 59, 0

Conread position: 25-401
Cow position: chr6:12093456-12093091 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 35-433
Cow position: chr6:30478503-30478890 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 396, 63

Conread position: 73-377
Cow position: chr6:21836676-21836358 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 227
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 26, 217

Conread position: 84-398
Cow position: chr6:52068-51754 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 85-440
Cow position: chr6:701403-701758 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 18

Conread position: 89-441
Cow position: chr6:65841043-65841400 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 274, 0

Conread position: 90-432
Cow position: chr6:7180205-7179868 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 239
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 22, 68

Conread position: 94-400
Cow position: chr6:63198668-63198375 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 201
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 53, 0

Conread position: 94-435
Cow position: chr6:51190006-51190339 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 217
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 38, 143

Conread position: 98-435
Cow position: chr6:41757521-41757186 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 0

Conread position: 98-441
Cow position: chr6:28492048-28491708 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 0

Conread position: 98-441
Cow position: chr6:34126814-34127154 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 329, 0

Conread position: 98-441
Cow position: chr6:44028520-44028853 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 230
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 57, 0

Conread position: 98-441
Cow position: chr6:45671732-45672070 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 0

Conread position: 102-441
Cow position: chr6:1405760-1405431 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 235
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 54, 0

Conread position: 103-402
Cow position: chr6:25357138-25357439 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 202
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 60, 219

Conread position: 104-275
Cow position: chr6:476563-476734 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 121
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 105-398
Cow position: chr6:64713019-64713311 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 75

Conread position: 105-441
Cow position: chr6:64714586-64714921 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 75

Conread position: 107-436
Cow position: chr6:65822660-65822326 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 219
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 183, 107

Conread position: 107-441
Cow position: chr6:1823774-1823444 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 0

Conread position: 108-441
Cow position: chr6:68362850-68362514 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 264

Conread position: 109-432
Cow position: chr6:39161688-39162011 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 213
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 290, 59

Conread position: 111-441
Cow position: chr6:20561633-20561304 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 0

Conread position: 116-327
Cow position: chr6:10640282-10640482 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 152
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 41, 0

Conread position: 116-441
Cow position: chr6:59919793-59919473 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 234
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 21, 69

Conread position: 120-397
Cow position: chr6:30275690-30275421 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 197
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 45, 0

Conread position: 120-439
Cow position: chr6:13943398-13943715 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 194
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 181, 271

Conread position: 121-438
Cow position: chr6:52803907-52804218 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 206
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 73, 162

Conread position: 122-422
Cow position: chr6:66194486-66194194 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 191
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 122-433
Cow position: chr6:1384355-1384047 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 201
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 274, 194

Conread position: 128-402
Cow position: chr6:10054122-10054381 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 197
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 179, 26

Conread position: 129-441
Cow position: chr6:2885740-2886028 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 208
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 18, 0

Conread position: 131-342
Cow position: chr6:13276056-13276267 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 150
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 170, 41

Conread position: 131-436
Cow position: chr6:2401735-2402050 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 224
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 24, 215

Conread position: 132-441
Cow position: chr6:6566108-6566418 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 140-387
Cow position: chr6:28106256-28106016 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 186
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 20, 0

Conread position: 142-441
Cow position: chr6:17045570-17045867 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 253

Conread position: 142-441
Cow position: chr6:29311001-29311296 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 235

Conread position: 163-403
Cow position: chr6:65007373-65007611 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 175
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 154, 64

Conread position: 173-441
Cow position: chr6:42723382-42723119 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 192
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 172, 0

Conread position: 178-441
Cow position: chr6:65927488-65927742 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 178
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 102, 0

Conread position: 187-431
Cow position: chr6:58409356-58409113 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 178
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 241, 103

Conread position: 191-441
Cow position: chr6:42926936-42927190 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 184
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 123, 232

Conread position: 194-427
Cow position: chr6:10559079-10558849 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 170
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 201, 49

Conread position: 195-441
Cow position: chr6:8761741-8761495 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 181
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 300-402
Cow position: chr6:37115803-37115905 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 90
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 95, 15

Show alignments to all cow chromosomes.