Cow genome map

Conread name: Ss1.1-Pig1-122O09.5

Conread position: 1-426
Cow position: chr7:1448963-1449375 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 43

Conread position: 1-433
Cow position: chr7:3154249-3154671 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 402, 93

Conread position: 1-441
Cow position: chr7:1358193-1357774 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 96

Conread position: 3-400
Cow position: chr7:1736700-1736324 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 263
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 301, 14

Conread position: 10-441
Cow position: chr7:34485392-34485807 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 420, 48

Conread position: 11-441
Cow position: chr7:21984881-21985294 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 12-441
Cow position: chr7:48632883-48633295 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 0

Conread position: 15-210
Cow position: chr7:41489630-41489822 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 134
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 170, 68

Conread position: 15-265
Cow position: chr7:10431901-10431666 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 177
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 200, 69

Conread position: 15-302
Cow position: chr7:67425863-67426142 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 197
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 83, 0

Conread position: 15-309
Cow position: chr7:68779372-68779092 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 211
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 288, 76

Conread position: 15-347
Cow position: chr7:21242621-21242300 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 327, 68

Conread position: 15-354
Cow position: chr7:27143821-27144144 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 69

Conread position: 15-375
Cow position: chr7:47049914-47050250 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 243
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 47, 0

Conread position: 15-394
Cow position: chr7:34148594-34148958 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 15-399
Cow position: chr7:27786118-27786485 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 15-401
Cow position: chr7:20429525-20429157 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 249
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 80, 0

Conread position: 15-429
Cow position: chr7:38396712-38397111 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 69

Conread position: 15-432
Cow position: chr7:53014981-53015385 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 280
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 187, 83

Conread position: 15-441
Cow position: chr7:1373163-1372757 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 15-441
Cow position: chr7:8145752-8145343 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 393, 69

Conread position: 15-441
Cow position: chr7:14140107-14139701 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 15-441
Cow position: chr7:21235525-21235116 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 15-441
Cow position: chr7:24808982-24808572 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 355, 67

Conread position: 15-441
Cow position: chr7:39791222-39791635 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 304, 69

Conread position: 15-441
Cow position: chr7:54602335-54602746 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 31

Conread position: 15-441
Cow position: chr7:55538430-55538022 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 15-441
Cow position: chr7:60857870-60857473 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 279
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 26, 20

Conread position: 15-441
Cow position: chr7:64242450-64242047 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 15-441
Cow position: chr7:67798342-67798747 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 0

Conread position: 15-442
Cow position: chr7:51013457-51013865 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 294
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 129, 79

Conread position: 17-358
Cow position: chr7:30156813-30156476 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 0

Conread position: 17-393
Cow position: chr7:29371273-29370916 (view UCSC Genome Browser custom track)
Alignm length: 378
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 53

Conread position: 17-433
Cow position: chr7:53990246-53990631 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 395, 68

Conread position: 18-265
Cow position: chr7:7255747-7256011 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 177
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 70, 0

Conread position: 18-399
Cow position: chr7:20799960-20799578 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 271
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 80, 276

Conread position: 18-441
Cow position: chr7:11467270-11466842 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 294
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 78, 160

Conread position: 18-441
Cow position: chr7:27102655-27102218 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 426

Conread position: 19-402
Cow position: chr7:13538238-13537872 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 0

Conread position: 19-441
Cow position: chr7:17414-16977 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 288
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 74, 153

Conread position: 19-441
Cow position: chr7:447130-446736 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 291
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 369, 65

Conread position: 19-441
Cow position: chr7:3301698-3301259 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 270

Conread position: 19-441
Cow position: chr7:25438997-25439419 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 290
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 69, 129

Conread position: 19-441
Cow position: chr7:26025518-26025934 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 280
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 103, 65

Conread position: 19-441
Cow position: chr7:47374453-47374892 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 20-401
Cow position: chr7:6720005-6720403 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 34-441
Cow position: chr7:29469366-29469757 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 61

Conread position: 35-276
Cow position: chr7:33406704-33406479 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 177
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 49, 0

Conread position: 37-442
Cow position: chr7:39109210-39108822 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 58

Conread position: 41-435
Cow position: chr7:27531359-27530974 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 256
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 66, 82

Conread position: 54-441
Cow position: chr7:21309741-21310104 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 273
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 359, 41

Conread position: 73-432
Cow position: chr7:41876947-41876592 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 224
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 69, 34

Conread position: 88-441
Cow position: chr7:6649111-6648760 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 0

Conread position: 93-441
Cow position: chr7:26890358-26890697 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 0

Conread position: 98-354
Cow position: chr7:20529143-20528887 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 174
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 234, 57

Conread position: 98-396
Cow position: chr7:6643320-6643022 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 98-441
Cow position: chr7:3235130-3234788 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 0

Conread position: 98-441
Cow position: chr7:61558766-61559108 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 60

Conread position: 98-441
Cow position: chr7:63020409-63020748 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 107

Conread position: 99-389
Cow position: chr7:63384907-63385199 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 0

Conread position: 103-438
Cow position: chr7:750485-750825 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 226
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 63, 57

Conread position: 104-441
Cow position: chr7:21128086-21127762 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 0

Conread position: 104-441
Cow position: chr7:46902515-46902181 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 0

Conread position: 107-441
Cow position: chr7:20294439-20294767 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 58

Conread position: 116-441
Cow position: chr7:52120508-52120184 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 213
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 262, 44

Conread position: 120-435
Cow position: chr7:25686634-25686325 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 205
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 40, 94

Conread position: 123-401
Cow position: chr7:59027605-59027873 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 186
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 197, 11

Conread position: 123-435
Cow position: chr7:18962523-18962821 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 206
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 71, 24

Conread position: 126-436
Cow position: chr7:49290182-49290485 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 210
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 175, 8

Conread position: 131-441
Cow position: chr7:41870344-41870036 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 116

Conread position: 133-451
Cow position: chr7:20307194-20306885 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 223
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 26, 0

Conread position: 134-441
Cow position: chr7:36084914-36085233 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 226
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 9, 142

Conread position: 138-429
Cow position: chr7:522244-521961 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 0

Conread position: 138-429
Cow position: chr7:35287971-35287678 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 272

Conread position: 142-435
Cow position: chr7:1400752-1400471 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 211
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 23, 0

Conread position: 142-436
Cow position: chr7:68858486-68858202 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 252, 15

Conread position: 151-441
Cow position: chr7:38536129-38536413 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 207
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 163, 28

Conread position: 151-442
Cow position: chr7:55281192-55280906 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 201
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 43, 141

Conread position: 160-395
Cow position: chr7:68907224-68907466 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 175
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 9, 0

Conread position: 170-402
Cow position: chr7:62680031-62679797 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 162
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 122, 0

Conread position: 176-345
Cow position: chr7:41489766-41489934 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 129
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 11, 5

Conread position: 176-441
Cow position: chr7:35297964-35297703 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 158

Conread position: 181-435
Cow position: chr7:59136067-59136322 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 171
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 55, 20

Conread position: 189-441
Cow position: chr7:19925168-19924919 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 183
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 205, 0

Conread position: 189-441
Cow position: chr7:68436399-68436150 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 149
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 15, 0

Conread position: 190-441
Cow position: chr7:11446204-11446451 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 179
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 37, 0

Conread position: 191-441
Cow position: chr7:67416690-67416940 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 184
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 129, 65

Conread position: 197-441
Cow position: chr7:21976084-21975840 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 205-441
Cow position: chr7:45949488-45949252 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 173
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 206-441
Cow position: chr7:51911691-51911457 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 179
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 95, 225

Conread position: 223-441
Cow position: chr7:993914-994131 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 163
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 84, 14

Conread position: 298-436
Cow position: chr7:6489556-6489420 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 104
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 120, 0

Show alignments to all cow chromosomes.