Cow genome map

Conread name: Ss1.1-Pig1-122O09.5

Conread position: 1-249
Cow position: chr8:19229460-19229700 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 177
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 82, 0

Conread position: 1-328
Cow position: chr8:24421125-24420818 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 0

Conread position: 1-401
Cow position: chr8:45161703-45161316 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 0

Conread position: 1-402
Cow position: chr8:53426987-53427372 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 94

Conread position: 1-433
Cow position: chr8:11800893-11801311 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 127, 82

Conread position: 1-436
Cow position: chr8:38607868-38607425 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 94

Conread position: 2-355
Cow position: chr8:42161992-42161660 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 0

Conread position: 2-439
Cow position: chr8:45448124-45448529 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 92

Conread position: 2-441
Cow position: chr8:27924798-27925206 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 296, 32

Conread position: 2-441
Cow position: chr8:27984153-27983713 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 93

Conread position: 2-453
Cow position: chr8:47884670-47885121 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 160

Conread position: 8-441
Cow position: chr8:38390038-38390450 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 0

Conread position: 10-441
Cow position: chr8:8518935-8518497 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 139

Conread position: 10-441
Cow position: chr8:61198447-61198033 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 74

Conread position: 12-447
Cow position: chr8:33588048-33588467 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 0

Conread position: 14-441
Cow position: chr8:9274660-9275102 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 297
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 31, 37

Conread position: 15-275
Cow position: chr8:14592736-14592496 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 182
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 69, 0

Conread position: 15-280
Cow position: chr8:14929354-14929106 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 189
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 59, 0

Conread position: 15-300
Cow position: chr8:30491033-30490759 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 192
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 82, 92

Conread position: 15-318
Cow position: chr8:44121526-44121822 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 215
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 35, 83

Conread position: 15-328
Cow position: chr8:38087799-38088095 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 0

Conread position: 15-330
Cow position: chr8:11761037-11761336 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 210
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 243, 91

Conread position: 15-342
Cow position: chr8:3784254-3784564 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 233
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 69, 0

Conread position: 15-385
Cow position: chr8:25777201-25776848 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 15-402
Cow position: chr8:13735321-13735697 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 15-429
Cow position: chr8:33429598-33429983 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 15-433
Cow position: chr8:46945488-46945051 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 316

Conread position: 15-436
Cow position: chr8:11970898-11970483 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 81

Conread position: 15-436
Cow position: chr8:44077345-44076942 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 29

Conread position: 15-439
Cow position: chr8:4686069-4686475 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 15-440
Cow position: chr8:50289498-50289069 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 284
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 78, 137

Conread position: 15-441
Cow position: chr8:2171724-2171297 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 119

Conread position: 15-441
Cow position: chr8:8230128-8229699 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 7

Conread position: 15-441
Cow position: chr8:8316952-8316552 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 68

Conread position: 15-441
Cow position: chr8:23770313-23770722 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 15-441
Cow position: chr8:24916655-24916254 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 15-441
Cow position: chr8:25407134-25407531 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 0

Conread position: 15-441
Cow position: chr8:32319874-32319464 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 15-441
Cow position: chr8:36636869-36636459 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 15-441
Cow position: chr8:36637984-36637574 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 15-441
Cow position: chr8:44244898-44244492 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 15-441
Cow position: chr8:45796069-45795661 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 15-441
Cow position: chr8:47073912-47074352 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 297
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 73, 28

Conread position: 15-441
Cow position: chr8:49214101-49214512 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 74

Conread position: 15-441
Cow position: chr8:50993469-50993870 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 387, 69

Conread position: 15-441
Cow position: chr8:59263219-59262811 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 15-441
Cow position: chr8:60059878-60060286 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 15-447
Cow position: chr8:3857339-3856926 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 15-447
Cow position: chr8:8402526-8402113 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 0

Conread position: 16-435
Cow position: chr8:9540828-9540413 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 79

Conread position: 18-400
Cow position: chr8:10748028-10748422 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 314

Conread position: 18-441
Cow position: chr8:2885395-2885827 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 277

Conread position: 18-441
Cow position: chr8:25522076-25522481 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 0

Conread position: 18-441
Cow position: chr8:26007119-26006684 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 314

Conread position: 18-441
Cow position: chr8:32439798-32439359 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 359

Conread position: 18-441
Cow position: chr8:37657617-37657187 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 289

Conread position: 18-441
Cow position: chr8:47070165-47069724 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 157

Conread position: 18-441
Cow position: chr8:47662649-47662244 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 0

Conread position: 19-305
Cow position: chr8:29581699-29582002 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 198
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 68, 0

Conread position: 19-441
Cow position: chr8:6066072-6065640 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 162

Conread position: 19-441
Cow position: chr8:8656571-8656133 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 132

Conread position: 19-441
Cow position: chr8:27578054-27578490 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 325

Conread position: 19-447
Cow position: chr8:8904824-8904430 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 285
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 79, 0

Conread position: 19-447
Cow position: chr8:19050157-19050576 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 393, 60

Conread position: 20-441
Cow position: chr8:1154625-1154225 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 278
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 64, 0

Conread position: 22-441
Cow position: chr8:42467073-42467462 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 281
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 73, 0

Conread position: 35-421
Cow position: chr8:11757405-11757781 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 354, 66

Conread position: 88-439
Cow position: chr8:12504732-12505078 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 238
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 70, 0

Conread position: 88-441
Cow position: chr8:9734980-9735331 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 0

Conread position: 89-441
Cow position: chr8:8909968-8910306 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 91-397
Cow position: chr8:25542336-25542634 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 98-396
Cow position: chr8:1318780-1319087 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 209
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 61, 0

Conread position: 98-432
Cow position: chr8:8557389-8557059 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 231
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 300, 192

Conread position: 98-435
Cow position: chr8:46222573-46222248 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 221
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 96, 49

Conread position: 98-441
Cow position: chr8:22572554-22572212 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 231
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 209, 63

Conread position: 99-441
Cow position: chr8:12664283-12663937 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 241
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 13, 20

Conread position: 103-395
Cow position: chr8:13808071-13808359 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 191
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 30, 13

Conread position: 103-441
Cow position: chr8:5015929-5016265 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 234
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 82, 35

Conread position: 103-441
Cow position: chr8:17310770-17311101 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 70

Conread position: 104-435
Cow position: chr8:42658713-42658387 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 223
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 9, 41

Conread position: 104-447
Cow position: chr8:29441081-29440738 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 104-450
Cow position: chr8:19328701-19329047 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 112-441
Cow position: chr8:19174011-19173687 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 0

Conread position: 116-441
Cow position: chr8:45188824-45189178 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 241
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 27, 0

Conread position: 121-324
Cow position: chr8:5873402-5873605 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 149
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 75, 29

Conread position: 131-399
Cow position: chr8:23216528-23216790 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 184
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 24, 60

Conread position: 131-425
Cow position: chr8:11821086-11821383 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 209
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 6, 0

Conread position: 139-441
Cow position: chr8:44693089-44693378 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 209
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 26, 0

Conread position: 140-441
Cow position: chr8:37931078-37931378 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 208
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 278, 0

Conread position: 142-426
Cow position: chr8:32632228-32631955 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 193
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 13, 0

Conread position: 160-441
Cow position: chr8:47670263-47670538 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 19

Conread position: 162-348
Cow position: chr8:11831552-11831730 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 138
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 9, 0

Conread position: 163-441
Cow position: chr8:42483729-42484011 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 158
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 36, 127

Conread position: 168-427
Cow position: chr8:44036956-44036697 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 181
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 19, 153

Conread position: 176-402
Cow position: chr8:8596076-8595850 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 179-435
Cow position: chr8:41739378-41739624 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 171
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 86, 93

Conread position: 187-435
Cow position: chr8:27377983-27378225 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 167
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 115, 71

Conread position: 189-441
Cow position: chr8:61035522-61035282 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 184
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 12, 19

Conread position: 191-429
Cow position: chr8:45317289-45317053 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 179
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 125, 0

Conread position: 191-441
Cow position: chr8:32930338-32930597 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 192
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 121, 166

Conread position: 207-441
Cow position: chr8:39196367-39196133 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 173
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 235-436
Cow position: chr8:46091982-46091784 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 144
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 160, 168

Conread position: 256-441
Cow position: chr8:14592290-14592112 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 139
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 8, 148

Conread position: 271-441
Cow position: chr8:14929079-14928909 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 121
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 145, 79

Show alignments to all cow chromosomes.