Cow genome map

Conread name: Ss1.1-Pig1-122O09.5

Conread position: 1-441
Cow position: chr9:4984088-4984509 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 278
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 266, 22

Conread position: 2-338
Cow position: chr9:8969722-8969410 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 233
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 330, 93

Conread position: 4-441
Cow position: chr9:29629433-29629012 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 0

Conread position: 11-441
Cow position: chr9:418206-417796 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 15-358
Cow position: chr9:10855524-10855852 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 69

Conread position: 15-436
Cow position: chr9:2488666-2488241 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 287
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 73, 271

Conread position: 15-436
Cow position: chr9:59443153-59443582 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 82

Conread position: 15-439
Cow position: chr9:1996587-1996180 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 390, 58

Conread position: 15-439
Cow position: chr9:9012433-9012843 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 275, 69

Conread position: 15-441
Cow position: chr9:3548845-3548438 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 69

Conread position: 15-441
Cow position: chr9:5003338-5003748 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 69

Conread position: 15-441
Cow position: chr9:6051712-6051312 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 284
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 69, 0

Conread position: 15-441
Cow position: chr9:16175093-16175502 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 0

Conread position: 15-441
Cow position: chr9:27034034-27034442 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 70

Conread position: 15-441
Cow position: chr9:28020872-28021282 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 397, 69

Conread position: 15-441
Cow position: chr9:30671696-30672105 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 408, 69

Conread position: 15-441
Cow position: chr9:31806864-31807272 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 70

Conread position: 15-441
Cow position: chr9:37163482-37163073 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 15-441
Cow position: chr9:37971883-37971472 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 0

Conread position: 15-441
Cow position: chr9:42309007-42309418 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 65

Conread position: 15-441
Cow position: chr9:42568198-42568605 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 15-441
Cow position: chr9:45872644-45873084 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 381

Conread position: 15-441
Cow position: chr9:47001538-47001939 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 15-441
Cow position: chr9:51183383-51182976 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 15-441
Cow position: chr9:59483339-59482937 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 15-441
Cow position: chr9:59535430-59535833 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 15-446
Cow position: chr9:6831218-6830809 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 69

Conread position: 15-447
Cow position: chr9:59174832-59174416 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 17-441
Cow position: chr9:54359933-54360338 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 0

Conread position: 18-441
Cow position: chr9:223227-222814 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 279
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 104, 66

Conread position: 18-441
Cow position: chr9:2199444-2199842 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 290
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 323, 88

Conread position: 18-441
Cow position: chr9:4671904-4672342 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 154

Conread position: 18-441
Cow position: chr9:17065092-17064663 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 292
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 39, 186

Conread position: 18-441
Cow position: chr9:27933389-27933829 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 0

Conread position: 18-441
Cow position: chr9:34243303-34242863 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 0

Conread position: 18-441
Cow position: chr9:46626502-46626064 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 154

Conread position: 19-427
Cow position: chr9:59456269-59455878 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 19-441
Cow position: chr9:781503-781067 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 290
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 69, 155

Conread position: 19-441
Cow position: chr9:1252653-1252232 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 279
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 111, 42

Conread position: 19-441
Cow position: chr9:2185254-2185696 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 169

Conread position: 19-441
Cow position: chr9:16267657-16268096 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 226

Conread position: 19-441
Cow position: chr9:50788865-50789301 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 290

Conread position: 19-442
Cow position: chr9:2629847-2630253 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 269
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 12, 20

Conread position: 38-436
Cow position: chr9:2500982-2500566 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 392

Conread position: 38-441
Cow position: chr9:832085-831699 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 45

Conread position: 84-429
Cow position: chr9:29028852-29028506 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 175
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 24, 0

Conread position: 90-441
Cow position: chr9:2170439-2170790 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 256

Conread position: 92-402
Cow position: chr9:3868113-3867808 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 206
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 39, 11

Conread position: 94-393
Cow position: chr9:2493230-2492934 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 196
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 28, 9

Conread position: 97-435
Cow position: chr9:3938395-3938061 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 207
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 315, 21

Conread position: 97-441
Cow position: chr9:25755815-25755471 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 232
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 84, 300

Conread position: 98-429
Cow position: chr9:12401639-12401967 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 0

Conread position: 98-441
Cow position: chr9:164098-163755 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 98-441
Cow position: chr9:1076805-1076464 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 0

Conread position: 98-441
Cow position: chr9:25483264-25483608 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 120, 111

Conread position: 98-441
Cow position: chr9:31194775-31194432 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 99-441
Cow position: chr9:6973565-6973887 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 219
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 71, 0

Conread position: 102-441
Cow position: chr9:33834875-33834538 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 103-441
Cow position: chr9:13219728-13220056 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 221
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 184, 99

Conread position: 104-430
Cow position: chr9:2051857-2052174 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 224
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 9, 177

Conread position: 104-441
Cow position: chr9:7001952-7002288 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 311, 0

Conread position: 104-441
Cow position: chr9:18510326-18509989 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 107-435
Cow position: chr9:9577007-9577328 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 211
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 49, 60

Conread position: 107-441
Cow position: chr9:6756976-6757307 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 226
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 248, 48

Conread position: 109-441
Cow position: chr9:39992350-39992654 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 224
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 270, 17

Conread position: 113-441
Cow position: chr9:10321228-10321557 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 0

Conread position: 130-441
Cow position: chr9:59510025-59510341 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 208
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 175, 199

Conread position: 140-441
Cow position: chr9:830114-829825 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 219
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 59, 16

Conread position: 142-441
Cow position: chr9:4531930-4532229 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 255, 98

Conread position: 142-441
Cow position: chr9:60278587-60278287 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 0

Conread position: 151-441
Cow position: chr9:3155490-3155767 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 197
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 25, 0

Conread position: 160-441
Cow position: chr9:15071972-15072251 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 19

Conread position: 162-341
Cow position: chr9:34991110-34991284 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 132
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 17, 0

Conread position: 162-402
Cow position: chr9:3585762-3585998 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 178
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 17, 0

Conread position: 168-429
Cow position: chr9:28626567-28626308 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 193
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 19, 149

Conread position: 171-441
Cow position: chr9:36723968-36724236 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 190
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 119, 0

Conread position: 176-441
Cow position: chr9:31020276-31020545 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 192
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 131, 0

Conread position: 178-400
Cow position: chr9:18836259-18836477 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 158
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 16, 7

Conread position: 180-441
Cow position: chr9:28677449-28677710 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 184
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 251, 120

Conread position: 186-398
Cow position: chr9:7062626-7062414 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 163
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 188-441
Cow position: chr9:793022-792778 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 190
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 151, 50

Conread position: 188-441
Cow position: chr9:37130059-37129803 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 193
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 63, 101

Conread position: 189-430
Cow position: chr9:3567370-3567129 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 180
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 189-441
Cow position: chr9:26712834-26712584 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 168
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 215, 0

Conread position: 190-430
Cow position: chr9:34107235-34106993 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 167
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 117, 141

Conread position: 193-367
Cow position: chr9:10314868-10315042 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 137
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 108, 41

Conread position: 200-439
Cow position: chr9:22650649-22650884 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 181
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 194, 0

Conread position: 202-400
Cow position: chr9:651597-651393 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 152
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 91, 76

Conread position: 203-441
Cow position: chr9:60651965-60651729 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 169
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 93, 0

Conread position: 205-402
Cow position: chr9:1979446-1979641 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 152
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 80, 0

Conread position: 210-441
Cow position: chr9:32968244-32968476 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 171
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 39, 190

Conread position: 257-429
Cow position: chr9:35657518-35657686 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 121
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 39, 0

Conread position: 263-428
Cow position: chr9:2697378-2697209 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 120
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 63, 0

Show alignments to all cow chromosomes.