Cow genome map

Conread name: Ss1.1-Pig2-5O09.5

Conread position: 354-594
Cow position: chr1:98413027-98412792 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 0

Conread position: 357-579
Cow position: chr1:638197-638422 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 177
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 87, 162

Conread position: 357-589
Cow position: chr1:98880005-98879773 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 182
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 57, 76

Conread position: 357-594
Cow position: chr1:75184940-75185173 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 0

Conread position: 357-595
Cow position: chr1:5655430-5655197 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 187
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 358-486
Cow position: chr1:84245729-84245599 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 58, 0

Conread position: 358-489
Cow position: chr1:77949197-77949328 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 98
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 358-493
Cow position: chr1:47365262-47365397 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 112
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 358-510
Cow position: chr1:30086399-30086250 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 123
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 107, 0

Conread position: 358-512
Cow position: chr1:81642196-81642043 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 123
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 48, 92

Conread position: 358-519
Cow position: chr1:17635018-17634855 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 129
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 60, 0

Conread position: 358-566
Cow position: chr1:83120655-83120859 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 154
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 97, 90

Conread position: 358-594
Cow position: chr1:32496217-32496440 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 180
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 56, 0

Conread position: 358-594
Cow position: chr1:78027847-78027613 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 134

Conread position: 359-507
Cow position: chr1:77942862-77942715 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 116
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 94, 0

Conread position: 359-614
Cow position: chr1:32501154-32501407 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 184
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 52, 88

Conread position: 360-503
Cow position: chr1:31978421-31978551 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 114
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 360-526
Cow position: chr1:100140333-100140501 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 131
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 58, 0

Conread position: 360-588
Cow position: chr1:79839699-79839483 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 169
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 175, 16

Conread position: 360-592
Cow position: chr1:57267133-57266908 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 171
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 175, 16

Conread position: 360-593
Cow position: chr1:91026055-91026276 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 187
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 205, 36

Conread position: 360-594
Cow position: chr1:39297485-39297712 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 173
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 214, 36

Conread position: 361-589
Cow position: chr1:87757559-87757341 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 170
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 115, 43

Conread position: 361-589
Cow position: chr1:88767875-88768092 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 169
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 115, 43

Conread position: 362-489
Cow position: chr1:29107492-29107365 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 110
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 362-582
Cow position: chr1:32964877-32965097 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 167
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 209, 196

Conread position: 362-587
Cow position: chr1:32284692-32284906 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 176
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 13, 20

Conread position: 364-572
Cow position: chr1:55117761-55117968 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 164
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 0

Conread position: 364-594
Cow position: chr1:29099871-29099641 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 170
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 198, 209

Conread position: 365-594
Cow position: chr1:89776832-89776607 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 0

Conread position: 366-589
Cow position: chr1:93431149-93431352 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 172
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 103, 0

Conread position: 366-593
Cow position: chr1:35434745-35434963 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 172
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 58, 42

Conread position: 366-594
Cow position: chr1:48321584-48321366 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 176
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 99, 105

Conread position: 369-473
Cow position: chr1:16523567-16523671 (view UCSC Genome Browser custom track)
Alignm length: 105
Alignm identity: 87
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 369-594
Cow position: chr1:80315093-80315314 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 169
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 143, 0

Conread position: 383-555
Cow position: chr1:64752818-64752987 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 137
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 29, 0

Conread position: 383-594
Cow position: chr1:101441119-101440914 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 160
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 127, 0

Conread position: 388-544
Cow position: chr1:95063613-95063766 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 45, 0

Conread position: 403-655
Cow position: chr1:13246416-13246664 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 178
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 170, 111

Conread position: 403-708
Cow position: chr1:33647340-33647023 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 219
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 61, 147

Conread position: 406-589
Cow position: chr1:33881039-33881222 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 140
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 406-589
Cow position: chr1:76596141-76596323 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 149
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 9, 0

Conread position: 407-556
Cow position: chr1:74766459-74766607 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 52, 0

Conread position: 415-594
Cow position: chr1:23297669-23297845 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 166, 85

Conread position: 420-593
Cow position: chr1:11336013-11335840 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 138
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 115, 19

Conread position: 425-616
Cow position: chr1:22590081-22590272 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 142
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 118, 97

Conread position: 429-589
Cow position: chr1:55120381-55120229 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 125
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 18, 0

Conread position: 434-594
Cow position: chr1:15983067-15982912 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 79, 0

Conread position: 482-599
Cow position: chr1:47365616-47365731 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 96
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 55, 0

Show alignments to all cow chromosomes.