Cow genome map
| Conread name: | Ss1.1-Pig2-5O09.5 |
| Conread position: | 352-513 |
| Cow position: | chr10:27305999-27306160 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 356-593 |
| Cow position: | chr10:66000649-66000424 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 101, 48 |
| Conread position: | 357-588 |
| Cow position: | chr10:16732718-16732495 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 177 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 178, 47 |
| Conread position: | 357-594 |
| Cow position: | chr10:1036596-1036365 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 184 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 45, 31 |
| Conread position: | 358-485 |
| Cow position: | chr10:51686621-51686755 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 358-570 |
| Cow position: | chr10:42349305-42349097 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 202, 85 |
| Conread position: | 358-582 |
| Cow position: | chr10:62892459-62892245 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 173 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 358-585 |
| Cow position: | chr10:65366963-65366742 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 172 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 156, 0 |
| Conread position: | 358-589 |
| Cow position: | chr10:68375460-68375243 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 358-591 |
| Cow position: | chr10:12404856-12405087 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 177, 61 |
| Conread position: | 358-593 |
| Cow position: | chr10:27686666-27686896 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 177, 50 |
| Conread position: | 358-594 |
| Cow position: | chr10:27687499-27687733 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 165 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 57, 157 |
| Conread position: | 358-594 |
| Cow position: | chr10:63684850-63685088 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 163 |
| Conread position: | 358-608 |
| Cow position: | chr10:32912633-32912882 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 196 |
| Conread position: | 360-583 |
| Cow position: | chr10:349867-349650 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 175, 44 |
| Conread position: | 360-584 |
| Cow position: | chr10:32983423-32983194 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 83 |
| Conread position: | 360-587 |
| Cow position: | chr10:69628443-69628219 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 175, 43 |
| Conread position: | 360-588 |
| Cow position: | chr10:33720655-33720889 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 85 |
| Conread position: | 360-589 |
| Cow position: | chr10:21388203-21387966 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 54, 130 |
| Conread position: | 360-589 |
| Cow position: | chr10:32421182-32420951 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 80 |
| Conread position: | 360-593 |
| Cow position: | chr10:40717991-40717764 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 56, 14 |
| Conread position: | 360-594 |
| Cow position: | chr10:838196-838425 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 362-593 |
| Cow position: | chr10:36211345-36211110 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 8 |
| Conread position: | 363-594 |
| Cow position: | chr10:23859911-23860147 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 0 |
| Conread position: | 364-594 |
| Cow position: | chr10:932208-931979 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 210, 70 |
| Conread position: | 365-480 |
| Cow position: | chr10:30048111-30048227 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 93 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 365-589 |
| Cow position: | chr10:67560954-67561193 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 190 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 17, 10 |
| Conread position: | 368-636 |
| Cow position: | chr10:52419962-52420217 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 197 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 371-594 |
| Cow position: | chr10:52449997-52450225 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 139, 27 |
| Conread position: | 388-512 |
| Cow position: | chr10:17315829-17315949 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 26, 16 |
| Conread position: | 394-580 |
| Cow position: | chr10:7730533-7730350 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 57, 38 |
| Conread position: | 405-698 |
| Cow position: | chr10:27414223-27413933 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 169, 43 |
| Conread position: | 408-706 |
| Cow position: | chr10:34450414-34450708 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 61, 44 |
| Conread position: | 413-589 |
| Cow position: | chr10:9862175-9862007 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 122, 17 |
| Conread position: | 413-593 |
| Cow position: | chr10:133356-133183 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 413-664 |
| Cow position: | chr10:60610968-60610718 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 124, 26 |
| Conread position: | 416-594 |
| Cow position: | chr10:25926831-25927008 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 140 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 158, 98 |
| Conread position: | 423-708 |
| Cow position: | chr10:63689971-63690256 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 27, 89 |
| Conread position: | 426-706 |
| Cow position: | chr10:31397495-31397769 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 147, 84 |
| Conread position: | 464-594 |
| Cow position: | chr10:33813847-33813721 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 470-589 |
| Cow position: | chr10:62889414-62889294 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 104, 88 |
| Conread position: | 470-693 |
| Cow position: | chr10:7408248-7408468 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 104, 35 |
| Conread position: | 554-708 |
| Cow position: | chr10:19593495-19593341 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 19, 11 |
Show alignments to all cow chromosomes.