Cow genome map
| Conread name: | Ss1.1-Pig2-5O09.5 |
| Conread position: | 325-480 |
| Cow position: | chr11:32391137-32390981 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 19, 68 |
| Conread position: | 354-594 |
| Cow position: | chr11:39234756-39234520 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 0 |
| Conread position: | 356-468 |
| Cow position: | chr11:37729217-37729106 (view UCSC Genome Browser custom track) |
| Alignm length: | 113 |
| Alignm identity: | 91 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 357-587 |
| Cow position: | chr11:4176631-4176419 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 173, 47 |
| Conread position: | 357-599 |
| Cow position: | chr11:9806425-9806659 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 188 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 53, 124 |
| Conread position: | 358-496 |
| Cow position: | chr11:72347021-72347159 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 358-513 |
| Cow position: | chr11:36258842-36258989 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 358-539 |
| Cow position: | chr11:7050164-7050343 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 72, 54 |
| Conread position: | 358-547 |
| Cow position: | chr11:63678386-63678202 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 358-585 |
| Cow position: | chr11:11682893-11682664 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 176 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 60, 45 |
| Conread position: | 358-590 |
| Cow position: | chr11:18167384-18167607 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 358-594 |
| Cow position: | chr11:881510-881741 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 0 |
| Conread position: | 358-594 |
| Cow position: | chr11:37125237-37125470 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 358-594 |
| Cow position: | chr11:37330119-37329886 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 0 |
| Conread position: | 358-594 |
| Cow position: | chr11:37356206-37356439 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 179 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 72, 155 |
| Conread position: | 358-594 |
| Cow position: | chr11:39242997-39242765 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 0 |
| Conread position: | 360-443 |
| Cow position: | chr11:7550241-7550324 (view UCSC Genome Browser custom track) |
| Alignm length: | 84 |
| Alignm identity: | 75 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 360-468 |
| Cow position: | chr11:39241410-39241302 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 87 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 360-479 |
| Cow position: | chr11:39204216-39204098 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 82, 74 |
| Conread position: | 360-579 |
| Cow position: | chr11:6604928-6604710 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 188 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 29 |
| Conread position: | 360-589 |
| Cow position: | chr11:31888443-31888212 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 80 |
| Conread position: | 360-591 |
| Cow position: | chr11:67774727-67774510 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 176, 44 |
| Conread position: | 360-593 |
| Cow position: | chr11:36901348-36901584 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 16 |
| Conread position: | 360-593 |
| Cow position: | chr11:51842321-51842544 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 184 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 176, 44 |
| Conread position: | 360-594 |
| Cow position: | chr11:5144373-5144605 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 29 |
| Conread position: | 360-594 |
| Cow position: | chr11:19703347-19703113 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 101 |
| Conread position: | 360-594 |
| Cow position: | chr11:41483271-41483495 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 0 |
| Conread position: | 362-446 |
| Cow position: | chr11:63664981-63664897 (view UCSC Genome Browser custom track) |
| Alignm length: | 85 |
| Alignm identity: | 75 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 363-589 |
| Cow position: | chr11:8097860-8098084 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 166, 38 |
| Conread position: | 363-594 |
| Cow position: | chr11:85953440-85953226 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 364-594 |
| Cow position: | chr11:20423453-20423227 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 210, 132 |
| Conread position: | 365-594 |
| Cow position: | chr11:37398904-37399124 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 103, 77 |
| Conread position: | 365-605 |
| Cow position: | chr11:67966890-67967123 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 18, 11 |
| Conread position: | 374-589 |
| Cow position: | chr11:4127469-4127259 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 161 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 149, 14 |
| Conread position: | 377-517 |
| Cow position: | chr11:42058110-42057969 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 390-593 |
| Cow position: | chr11:11602595-11602795 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 50, 14 |
| Conread position: | 400-594 |
| Cow position: | chr11:12342506-12342696 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 171, 111 |
| Conread position: | 401-589 |
| Cow position: | chr11:5187624-5187437 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 153 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 401-594 |
| Cow position: | chr11:5252402-5252595 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 163 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 403-706 |
| Cow position: | chr11:13857740-13857445 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 172, 111 |
| Conread position: | 405-572 |
| Cow position: | chr11:68403705-68403864 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 431-547 |
| Cow position: | chr11:33917770-33917654 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 104, 51 |
| Conread position: | 439-588 |
| Cow position: | chr11:39530656-39530510 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 96, 110 |
| Conread position: | 448-594 |
| Cow position: | chr11:63664620-63664478 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 607-723 |
| Cow position: | chr11:39874509-39874394 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 97 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 57, 0 |
Show alignments to all cow chromosomes.