Cow genome map
| Conread name: | Ss1.1-Pig2-5O09.5 |
| Conread position: | 349-599 |
| Cow position: | chr2:43551206-43551454 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 147, 0 |
| Conread position: | 357-467 |
| Cow position: | chr2:64175580-64175471 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 357-594 |
| Cow position: | chr2:38838200-38837964 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 171 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 175, 157 |
| Conread position: | 358-473 |
| Cow position: | chr2:46215650-46215535 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 91 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 358-510 |
| Cow position: | chr2:66982058-66982210 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 358-556 |
| Cow position: | chr2:17862068-17862257 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 79, 61 |
| Conread position: | 358-567 |
| Cow position: | chr2:46939143-46939345 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 358-589 |
| Cow position: | chr2:46966719-46966950 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 180 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 358-589 |
| Cow position: | chr2:74693101-74692868 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 63 |
| Conread position: | 358-593 |
| Cow position: | chr2:46408844-46408612 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 34 |
| Conread position: | 358-593 |
| Cow position: | chr2:57381725-57381491 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 40, 100 |
| Conread position: | 358-594 |
| Cow position: | chr2:16798919-16799152 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 15, 58 |
| Conread position: | 358-594 |
| Cow position: | chr2:30639597-30639838 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 188 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 97, 53 |
| Conread position: | 358-594 |
| Cow position: | chr2:34328892-34328660 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 179 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 30, 155 |
| Conread position: | 358-594 |
| Cow position: | chr2:46025419-46025651 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 24 |
| Conread position: | 358-602 |
| Cow position: | chr2:12146245-12146482 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 0 |
| Conread position: | 359-588 |
| Cow position: | chr2:70829704-70829928 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 176 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 24, 60 |
| Conread position: | 360-517 |
| Cow position: | chr2:63042038-63041873 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 360-593 |
| Cow position: | chr2:71474966-71475183 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 360-594 |
| Cow position: | chr2:37076512-37076280 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 177 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 198, 0 |
| Conread position: | 360-594 |
| Cow position: | chr2:38871905-38872138 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 178 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 169, 36 |
| Conread position: | 360-594 |
| Cow position: | chr2:46008588-46008356 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 362-473 |
| Cow position: | chr2:45284195-45284306 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 91 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 362-593 |
| Cow position: | chr2:39579026-39579248 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 173, 42 |
| Conread position: | 362-684 |
| Cow position: | chr2:54443179-54442884 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 363-582 |
| Cow position: | chr2:45773281-45773489 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 364-494 |
| Cow position: | chr2:28574453-28574583 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 364-574 |
| Cow position: | chr2:50138440-50138235 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 163 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 364-575 |
| Cow position: | chr2:38897405-38897605 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 364-594 |
| Cow position: | chr2:9937357-9937579 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 207, 16 |
| Conread position: | 365-594 |
| Cow position: | chr2:38876606-38876827 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 172 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 205, 36 |
| Conread position: | 370-594 |
| Cow position: | chr2:46773395-46773179 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 376-593 |
| Cow position: | chr2:54448633-54448847 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 39, 67 |
| Conread position: | 382-602 |
| Cow position: | chr2:44556669-44556450 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 168 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 160, 0 |
| Conread position: | 401-540 |
| Cow position: | chr2:86513782-86513644 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 403-708 |
| Cow position: | chr2:36856494-36856201 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 211 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 166, 40 |
| Conread position: | 403-708 |
| Cow position: | chr2:72404326-72404621 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 168, 22 |
| Conread position: | 407-585 |
| Cow position: | chr2:65399985-65400164 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 167, 151 |
| Conread position: | 409-545 |
| Cow position: | chr2:10970135-10969998 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 413-589 |
| Cow position: | chr2:7348231-7348055 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 124, 24 |
| Conread position: | 413-593 |
| Cow position: | chr2:41697501-41697680 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 117, 26 |
| Conread position: | 415-706 |
| Cow position: | chr2:66856328-66856037 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 209 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 157, 92 |
| Conread position: | 416-594 |
| Cow position: | chr2:1332390-1332565 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 419-708 |
| Cow position: | chr2:78797652-78797367 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 154, 13 |
| Conread position: | 460-586 |
| Cow position: | chr2:40048139-40048265 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 482-708 |
| Cow position: | chr2:38648031-38647812 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 92, 31 |
| Conread position: | 482-708 |
| Cow position: | chr2:56274083-56273856 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 175 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 91, 29 |
| Conread position: | 531-707 |
| Cow position: | chr2:19508399-19508222 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 42, 121 |
Show alignments to all cow chromosomes.