Cow genome map
| Conread name: | Ss1.1-Pig2-5O09.5 |
| Conread position: | 351-593 |
| Cow position: | chr21:44721912-44722147 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 184, 19 |
| Conread position: | 355-593 |
| Cow position: | chr21:9207002-9206781 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 182, 62 |
| Conread position: | 355-594 |
| Cow position: | chr21:23639706-23639457 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 190 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 27, 42 |
| Conread position: | 357-480 |
| Cow position: | chr21:7074197-7074076 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 107 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 357-593 |
| Cow position: | chr21:16845227-16845009 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 180 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 178, 47 |
| Conread position: | 357-594 |
| Cow position: | chr21:24735406-24735164 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 104, 15 |
| Conread position: | 358-527 |
| Cow position: | chr21:6326678-6326510 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 106, 0 |
| Conread position: | 358-593 |
| Cow position: | chr21:6134676-6134465 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 358-594 |
| Cow position: | chr21:8851085-8851324 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 131 |
| Conread position: | 358-594 |
| Cow position: | chr21:25592850-25592622 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 182 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 359-498 |
| Cow position: | chr21:41687969-41687842 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 359-503 |
| Cow position: | chr21:7747582-7747725 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 360-501 |
| Cow position: | chr21:41569424-41569285 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 360-565 |
| Cow position: | chr21:17933843-17933628 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 57, 83 |
| Conread position: | 360-572 |
| Cow position: | chr21:45501862-45502069 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 170, 46 |
| Conread position: | 360-578 |
| Cow position: | chr21:34140261-34140472 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 157 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 175, 44 |
| Conread position: | 360-593 |
| Cow position: | chr21:15249855-15250078 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 177, 44 |
| Conread position: | 360-593 |
| Cow position: | chr21:20786028-20785790 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 208 |
| Conread position: | 360-593 |
| Cow position: | chr21:42475263-42475032 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 0 |
| Conread position: | 360-594 |
| Cow position: | chr21:41532400-41532629 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 360-601 |
| Cow position: | chr21:20186205-20185958 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 208 |
| Conread position: | 362-510 |
| Cow position: | chr21:12898619-12898766 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 362-583 |
| Cow position: | chr21:41548119-41547909 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 364-597 |
| Cow position: | chr21:7143632-7143414 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 178 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 54, 24 |
| Conread position: | 365-612 |
| Cow position: | chr21:1184776-1184534 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 369-594 |
| Cow position: | chr21:47963476-47963259 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 171 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 384-594 |
| Cow position: | chr21:29200619-29200827 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 176 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 386-678 |
| Cow position: | chr21:8399936-8400225 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 188, 126 |
| Conread position: | 392-594 |
| Cow position: | chr21:35449700-35449497 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 20, 127 |
| Conread position: | 393-594 |
| Cow position: | chr21:24207624-24207822 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 400-593 |
| Cow position: | chr21:34428408-34428598 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 134, 18 |
| Conread position: | 400-594 |
| Cow position: | chr21:20172582-20172394 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 405-708 |
| Cow position: | chr21:35695768-35695470 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 215 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 168, 102 |
| Conread position: | 408-640 |
| Cow position: | chr21:22512943-22512715 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 164 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 165, 99 |
| Conread position: | 409-589 |
| Cow position: | chr21:43623960-43623783 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 123, 78 |
| Conread position: | 409-594 |
| Cow position: | chr21:48595949-48595769 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 164, 78 |
| Conread position: | 410-594 |
| Cow position: | chr21:42169456-42169634 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 414-594 |
| Cow position: | chr21:46767162-46766978 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 125, 0 |
| Conread position: | 423-609 |
| Cow position: | chr21:43626654-43626471 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 53, 0 |
Show alignments to all cow chromosomes.