Cow genome map
| Conread name: | Ss1.1-Pig2-5O09.5 |
| Conread position: | 357-581 |
| Cow position: | chr3:19236890-19237113 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 154 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 34, 137 |
| Conread position: | 357-593 |
| Cow position: | chr3:3643459-3643693 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 181 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 60, 83 |
| Conread position: | 357-594 |
| Cow position: | chr3:7865349-7865117 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 16, 59 |
| Conread position: | 358-485 |
| Cow position: | chr3:58594680-58594553 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 24, 122 |
| Conread position: | 358-586 |
| Cow position: | chr3:36415943-36416172 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 215, 200 |
| Conread position: | 358-589 |
| Cow position: | chr3:4126864-4127087 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 179 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 358-589 |
| Cow position: | chr3:37256013-37256238 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 0 |
| Conread position: | 358-594 |
| Cow position: | chr3:7837484-7837708 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 358-594 |
| Cow position: | chr3:19236493-19236258 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 183 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 71, 156 |
| Conread position: | 358-594 |
| Cow position: | chr3:26586206-26586430 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 358-594 |
| Cow position: | chr3:27387701-27387951 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 65, 180 |
| Conread position: | 358-594 |
| Cow position: | chr3:28926190-28926406 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 358-594 |
| Cow position: | chr3:75077029-75077248 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 359-594 |
| Cow position: | chr3:63270879-63270652 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 180 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 214, 29 |
| Conread position: | 360-586 |
| Cow position: | chr3:22703073-22702858 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 360-588 |
| Cow position: | chr3:19230132-19229917 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 167 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 175, 16 |
| Conread position: | 360-593 |
| Cow position: | chr3:14185473-14185242 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 57, 84 |
| Conread position: | 362-600 |
| Cow position: | chr3:52026591-52026823 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 364-594 |
| Cow position: | chr3:22699730-22699508 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 364-594 |
| Cow position: | chr3:23938415-23938647 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 175 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 45, 119 |
| Conread position: | 364-594 |
| Cow position: | chr3:69220193-69220413 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 377-511 |
| Cow position: | chr3:35151154-35151021 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 380-501 |
| Cow position: | chr3:36543793-36543914 (view UCSC Genome Browser custom track) |
| Alignm length: | 122 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 400-723 |
| Cow position: | chr3:548210-547891 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 173, 28 |
| Conread position: | 401-593 |
| Cow position: | chr3:74797379-74797569 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 161 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 402-600 |
| Cow position: | chr3:5052335-5052138 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 46 |
| Conread position: | 403-659 |
| Cow position: | chr3:7813401-7813658 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 169, 111 |
| Conread position: | 403-704 |
| Cow position: | chr3:84872176-84872469 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 170, 27 |
| Conread position: | 404-581 |
| Cow position: | chr3:68544151-68544322 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 170, 73 |
| Conread position: | 404-646 |
| Cow position: | chr3:2682750-2682982 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 161, 29 |
| Conread position: | 408-694 |
| Cow position: | chr3:28650082-28649800 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 165, 106 |
| Conread position: | 411-707 |
| Cow position: | chr3:47749557-47749851 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 100, 106 |
| Conread position: | 413-593 |
| Cow position: | chr3:40567054-40567234 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 124, 24 |
| Conread position: | 414-576 |
| Cow position: | chr3:9255388-9255229 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 116, 25 |
| Conread position: | 415-594 |
| Cow position: | chr3:45839625-45839449 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 415-706 |
| Cow position: | chr3:41408071-41408354 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 159, 99 |
| Conread position: | 422-576 |
| Cow position: | chr3:7829836-7829991 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 149, 136 |
| Conread position: | 436-594 |
| Cow position: | chr3:33568037-33568191 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 448-588 |
| Cow position: | chr3:67815576-67815436 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 87, 109 |
| Conread position: | 453-708 |
| Cow position: | chr3:81356044-81356294 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 37, 59 |
| Conread position: | 458-708 |
| Cow position: | chr3:43807878-43808126 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 115, 56 |
| Conread position: | 469-706 |
| Cow position: | chr3:668033-668266 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 104, 45 |
| Conread position: | 471-594 |
| Cow position: | chr3:58594330-58594208 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 549-692 |
| Cow position: | chr3:13565430-13565285 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 24, 124 |
Show alignments to all cow chromosomes.