Cow genome map
| Conread name: | Ss1.1-Pig2-5O09.5 |
| Conread position: | 351-589 |
| Cow position: | chr4:40252470-40252696 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 181 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 355-567 |
| Cow position: | chr4:12263092-12263295 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 128, 49 |
| Conread position: | 355-587 |
| Cow position: | chr4:61680512-61680741 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 63, 35 |
| Conread position: | 357-482 |
| Cow position: | chr4:11689731-11689858 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 358-498 |
| Cow position: | chr4:32366819-32366680 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 112 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 358-545 |
| Cow position: | chr4:5206196-5206379 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 43, 8 |
| Conread position: | 358-573 |
| Cow position: | chr4:60941993-60941788 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 56, 18 |
| Conread position: | 358-594 |
| Cow position: | chr4:5227940-5228173 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 15, 58 |
| Conread position: | 358-594 |
| Cow position: | chr4:12228071-12227840 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 173 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 15, 58 |
| Conread position: | 358-594 |
| Cow position: | chr4:20316222-20316452 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 183 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 98, 89 |
| Conread position: | 358-594 |
| Cow position: | chr4:21614992-21615219 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 358-599 |
| Cow position: | chr4:6656577-6656336 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 18 |
| Conread position: | 358-609 |
| Cow position: | chr4:45986660-45986919 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 359-498 |
| Cow position: | chr4:26685950-26685814 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 360-588 |
| Cow position: | chr4:59866170-59866388 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 175, 36 |
| Conread position: | 360-594 |
| Cow position: | chr4:52119892-52119659 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 91, 40 |
| Conread position: | 361-501 |
| Cow position: | chr4:59065169-59065315 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 362-589 |
| Cow position: | chr4:20647802-20647588 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 362-594 |
| Cow position: | chr4:56412555-56412319 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 179 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 27, 53 |
| Conread position: | 364-556 |
| Cow position: | chr4:31180263-31180073 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 142 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 176, 150 |
| Conread position: | 365-498 |
| Cow position: | chr4:59205799-59205666 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 100 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 370-535 |
| Cow position: | chr4:14527239-14527399 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 380-594 |
| Cow position: | chr4:5265430-5265215 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 169 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 194, 167 |
| Conread position: | 400-594 |
| Cow position: | chr4:12263687-12263879 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 174, 68 |
| Conread position: | 400-706 |
| Cow position: | chr4:1918214-1917929 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 232, 69 |
| Conread position: | 402-706 |
| Cow position: | chr4:3671763-3672058 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 215 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 171, 92 |
| Conread position: | 403-706 |
| Cow position: | chr4:8131360-8131652 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 191, 108 |
| Conread position: | 463-594 |
| Cow position: | chr4:11691378-11691505 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 7, 81 |
| Conread position: | 463-707 |
| Cow position: | chr4:19678216-19677986 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 112, 51 |
| Conread position: | 565-706 |
| Cow position: | chr4:17640573-17640714 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 8, 46 |
Show alignments to all cow chromosomes.