Cow genome map
| Conread name: | Ss1.1-Pig2-5O09.5 |
| Conread position: | 352-510 |
| Cow position: | chr5:12785264-12785106 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 107, 94 |
| Conread position: | 355-498 |
| Cow position: | chr5:24886912-24887056 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 355-498 |
| Cow position: | chr5:24893350-24893493 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 39, 72 |
| Conread position: | 356-690 |
| Cow position: | chr5:51576864-51576528 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 234 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 28, 18 |
| Conread position: | 357-591 |
| Cow position: | chr5:44888183-44888417 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 82 |
| Conread position: | 357-599 |
| Cow position: | chr5:46862446-46862208 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 0 |
| Conread position: | 358-511 |
| Cow position: | chr5:19004414-19004262 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 358-588 |
| Cow position: | chr5:47997188-47996962 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 164 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 358-589 |
| Cow position: | chr5:22847146-22846919 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 169 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 215, 28 |
| Conread position: | 358-594 |
| Cow position: | chr5:8763566-8763798 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 15, 61 |
| Conread position: | 358-594 |
| Cow position: | chr5:17044208-17043977 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 178 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 359-496 |
| Cow position: | chr5:59088062-59088202 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 65, 81 |
| Conread position: | 360-498 |
| Cow position: | chr5:47960612-47960483 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 360-574 |
| Cow position: | chr5:68391561-68391771 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 168 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 172, 153 |
| Conread position: | 364-594 |
| Cow position: | chr5:18777974-18777750 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 172 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 364-594 |
| Cow position: | chr5:27990770-27990545 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 165 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 41, 150 |
| Conread position: | 365-708 |
| Cow position: | chr5:43659785-43659449 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 101 |
| Conread position: | 365-708 |
| Cow position: | chr5:44114482-44114824 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 23 |
| Conread position: | 370-588 |
| Cow position: | chr5:30412686-30412897 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 71, 34 |
| Conread position: | 389-594 |
| Cow position: | chr5:2187190-2186989 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 155 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 182, 71 |
| Conread position: | 390-589 |
| Cow position: | chr5:67964575-67964769 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 394-594 |
| Cow position: | chr5:40699274-40699072 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 140, 111 |
| Conread position: | 400-589 |
| Cow position: | chr5:31568308-31568119 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 92, 143 |
| Conread position: | 435-539 |
| Cow position: | chr5:22172980-22172876 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 87 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 439-593 |
| Cow position: | chr5:33715343-33715190 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 76, 66 |
| Conread position: | 470-708 |
| Cow position: | chr5:9329354-9329591 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 103, 56 |
| Conread position: | 486-706 |
| Cow position: | chr5:56634675-56634460 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 89, 25 |
| Conread position: | 492-706 |
| Cow position: | chr5:35622700-35622483 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 81, 35 |
| Conread position: | 493-708 |
| Cow position: | chr5:10886397-10886187 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 80, 21 |
| Conread position: | 519-706 |
| Cow position: | chr5:16054148-16053954 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 55, 152 |
| Conread position: | 542-690 |
| Cow position: | chr5:24887055-24887204 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 53, 0 |
Show alignments to all cow chromosomes.