Cow genome map
| Conread name: | Ss1.1-Pig2-5O09.5 |
| Conread position: | 353-497 |
| Cow position: | chr6:68572289-68572148 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 356-559 |
| Cow position: | chr6:42932115-42932316 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 356-594 |
| Cow position: | chr6:20676005-20676241 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 166 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 76, 69 |
| Conread position: | 357-589 |
| Cow position: | chr6:22602025-22602253 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 0 |
| Conread position: | 358-473 |
| Cow position: | chr6:60062887-60063001 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 92 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 358-579 |
| Cow position: | chr6:44820067-44819849 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 169 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 358-582 |
| Cow position: | chr6:49166802-49167032 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 131 |
| Conread position: | 358-587 |
| Cow position: | chr6:11087189-11086959 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 66, 185 |
| Conread position: | 358-587 |
| Cow position: | chr6:45338202-45338417 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 170 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 358-589 |
| Cow position: | chr6:60258485-60258716 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 202 |
| Conread position: | 358-593 |
| Cow position: | chr6:4066321-4066555 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 59, 18 |
| Conread position: | 358-594 |
| Cow position: | chr6:23899089-23899321 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 15, 59 |
| Conread position: | 358-594 |
| Cow position: | chr6:26224050-26224282 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 173 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 60, 70 |
| Conread position: | 358-602 |
| Cow position: | chr6:26207347-26207594 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 18 |
| Conread position: | 358-621 |
| Cow position: | chr6:61642758-61643016 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 193 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 150, 167 |
| Conread position: | 358-707 |
| Cow position: | chr6:21410856-21411201 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 249 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 32, 18 |
| Conread position: | 359-594 |
| Cow position: | chr6:16550736-16550967 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 76, 64 |
| Conread position: | 360-582 |
| Cow position: | chr6:67736619-67736404 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 175, 44 |
| Conread position: | 360-589 |
| Cow position: | chr6:19012396-19012173 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 181 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 54, 80 |
| Conread position: | 360-589 |
| Cow position: | chr6:36146630-36146410 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 165 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 8, 30 |
| Conread position: | 360-593 |
| Cow position: | chr6:60174642-60174876 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 177 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 59, 124 |
| Conread position: | 362-593 |
| Cow position: | chr6:58035595-58035826 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 11 |
| Conread position: | 364-528 |
| Cow position: | chr6:18788879-18789053 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 368-558 |
| Cow position: | chr6:14716683-14716860 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 374-493 |
| Cow position: | chr6:27047626-27047744 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 392-707 |
| Cow position: | chr6:45499425-45499721 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 179, 60 |
| Conread position: | 393-554 |
| Cow position: | chr6:26938107-26937951 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 24, 112 |
| Conread position: | 399-594 |
| Cow position: | chr6:2869873-2870065 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 174, 115 |
| Conread position: | 400-589 |
| Cow position: | chr6:49544670-49544486 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 400-594 |
| Cow position: | chr6:44686471-44686286 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 157 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 405-527 |
| Cow position: | chr6:44697339-44697462 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 96 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 411-594 |
| Cow position: | chr6:5668066-5667872 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 133, 61 |
| Conread position: | 413-508 |
| Cow position: | chr6:27275072-27275167 (view UCSC Genome Browser custom track) |
| Alignm length: | 96 |
| Alignm identity: | 80 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 413-582 |
| Cow position: | chr6:1012807-1012643 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 122, 26 |
| Conread position: | 470-704 |
| Cow position: | chr6:48376288-48376053 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 44, 34 |
| Conread position: | 587-708 |
| Cow position: | chr6:35548420-35548299 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 12, 71 |
| Conread position: | 597-722 |
| Cow position: | chr6:58085664-58085785 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 35, 0 |
Show alignments to all cow chromosomes.